Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019530.1 Corchorus olitorius cultivar O-4 contig19563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73372

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1066--1117
15
3.5
15
70
15
54
30
13
5
50
1.65
1269--1293
11
2.3
11
100
0
50
44
0
0
56
0.99
1782--1818
2
18.5
2
100
0
74
48
0
0
51
1.00
2882--3005
60
2.1
60
84
3
160
35
17
14
32
1.90
14315--14354
5
8.2
5
84
15
57
2
15
0
82
0.77
14823--14855
10
3.3
10
100
0
66
0
9
0
90
0.44
29035--29088
21
2.7
19
77
5
54
33
20
9
37
1.84
31562--31609
24
2.0
24
91
0
78
18
14
18
47
1.82
32338--32407
34
2.1
34
100
0
140
28
11
32
27
1.91
32424--32453
1
30.0
1
100
0
60
0
0
0
100
0.00
35601--35650
24
2.1
23
88
3
73
26
8
12
54
1.64
48469--48525
30
1.9
30
100
0
114
26
26
1
45
1.63
51443--51489
12
3.9
12
80
0
58
8
0
63
27
1.23
54258--54282
9
2.8
9
100
0
50
12
0
0
88
0.53
59488--59535
18
2.7
18
73
0
51
10
37
10
41
1.74

Tables:   1

The End!