Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019531.1 Corchorus olitorius cultivar O-4 contig19564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 204068
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:547 original size:23 final size:24
Alignment explanation
Indices: 521--605 Score: 88
Period size: 23 Copynumber: 3.6 Consensus size: 24
511 GGCGGGTCGC
*
521 GATCCGCG-CGCGACCTGGCCATG
1 GATCCGAGTCGCGACCTGGCCATG
* *
544 GATCCGAGTCGCGACGCGGGTC--G
1 GATCCGAGTCGCGAC-CTGGCCATG
*
567 CGATCCGCG-CGCGACCTGGCCATG
1 -GATCCGAGTCGCGACCTGGCCATG
591 GATCCGAGTCGCGAC
1 GATCCGAGTCGCGAC
606 GCGGGTCGCG
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
22 4 0.08
23 21 0.43
24 20 0.41
25 4 0.08
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.13
Consensus pattern (24 bp):
GATCCGAGTCGCGACCTGGCCATG
Found at i:581 original size:47 final size:47
Alignment explanation
Indices: 512--615 Score: 208
Period size: 47 Copynumber: 2.2 Consensus size: 47
502 ACGGACCATG
512 GCGGGTCGCGATCCGCGCGCGACCTGGCCATGGATCCGAGTCGCGAC
1 GCGGGTCGCGATCCGCGCGCGACCTGGCCATGGATCCGAGTCGCGAC
559 GCGGGTCGCGATCCGCGCGCGACCTGGCCATGGATCCGAGTCGCGAC
1 GCGGGTCGCGATCCGCGCGCGACCTGGCCATGGATCCGAGTCGCGAC
606 GCGGGTCGCG
1 GCGGGTCGCG
616 CGCGACCCTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.12, C:0.36, G:0.40, T:0.12
Consensus pattern (47 bp):
GCGGGTCGCGATCCGCGCGCGACCTGGCCATGGATCCGAGTCGCGAC
Found at i:11750 original size:31 final size:33
Alignment explanation
Indices: 11695--11755 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 33
11685 CGGTTAACAG
11695 GTTAATGTATGATCTACGACTTTCATGAAGAAA
1 GTTAATGTATGATCTACGACTTTCATGAAGAAA
* *
11728 GTTAAT-T-TGATTTACGAGTTTCATGAAG
1 GTTAATGTATGATCTACGACTTTCATGAAG
11756 GGTTCAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 19 0.73
32 1 0.04
33 6 0.23
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (33 bp):
GTTAATGTATGATCTACGACTTTCATGAAGAAA
Found at i:14856 original size:20 final size:19
Alignment explanation
Indices: 14816--14853 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14806 TAAATGAAAA
* *
14816 AAAATAGCCGCGTGGCATT
1 AAAATAGCCACGTGGAATT
14835 AAAATAGCCACGTGGAATT
1 AAAATAGCCACGTGGAATT
14854 TAATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (19 bp):
AAAATAGCCACGTGGAATT
Found at i:15446 original size:20 final size:20
Alignment explanation
Indices: 15401--15438 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15391 GGGTAAAATG
15401 TCCAAAATTAAAGTTTTGAA
1 TCCAAAATTAAAGTTTTGAA
**
15421 GGCAAAATTAAAGTTTTG
1 TCCAAAATTAAAGTTTTG
15439 GCTCCAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (20 bp):
TCCAAAATTAAAGTTTTGAA
Found at i:19660 original size:28 final size:28
Alignment explanation
Indices: 19628--19681 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
19618 TCCATCACCC
*
19628 ACAATAACTGTAGCTTGGCATCAGTAGG
1 ACAATAACTATAGCTTGGCATCAGTAGG
*
19656 ACAATAATTATAGCTTGGCATCAGTA
1 ACAATAACTATAGCTTGGCATCAGTA
19682 AAAACATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (28 bp):
ACAATAACTATAGCTTGGCATCAGTAGG
Found at i:22203 original size:17 final size:17
Alignment explanation
Indices: 22181--22217 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
22171 GGCTATACTT
22181 ATTTTAAAG-TATTAGGA
1 ATTTTAAAGCT-TTAGGA
22198 ATTTTAAAGCTTTAGGA
1 ATTTTAAAGCTTTAGGA
22215 ATT
1 ATT
22218 GGGAGTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.43
Consensus pattern (17 bp):
ATTTTAAAGCTTTAGGA
Found at i:24391 original size:30 final size:32
Alignment explanation
Indices: 24336--24399 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
24326 GTAATATCAT
24336 TTCAGAGGGACTAAAATGGCTCAAAATTACAAA
1 TTCAGAGGGACTAAAATGGCTCAAAATTA-AAA
*
24369 TTCA-AGGGAC-AAAAT-GTTCAAAATTAAAA
1 TTCAGAGGGACTAAAATGGCTCAAAATTAAAA
24398 TT
1 TT
24400 TATAAGGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 5 0.17
30 10 0.33
31 5 0.17
32 6 0.20
33 4 0.13
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (32 bp):
TTCAGAGGGACTAAAATGGCTCAAAATTAAAA
Found at i:25260 original size:16 final size:16
Alignment explanation
Indices: 25239--25270 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25229 CATCTTAACC
25239 TTGACCAATTGGAACA
1 TTGACCAATTGGAACA
25255 TTGACCAATTGGAACA
1 TTGACCAATTGGAACA
25271 GATGACAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (16 bp):
TTGACCAATTGGAACA
Found at i:25755 original size:16 final size:17
Alignment explanation
Indices: 25735--25767 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25725 AAATTTTTAT
25735 AAAAAAATTATT-TTTTG
1 AAAAAAA-TATTCTTTTG
25752 AAAAAAATATTCTTTT
1 AAAAAAATATTCTTTT
25768 AATTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
AAAAAAATATTCTTTTG
Found at i:31833 original size:131 final size:131
Alignment explanation
Indices: 31599--31862 Score: 456
Period size: 131 Copynumber: 2.0 Consensus size: 131
31589 AAGGTGTGTT
* * **
31599 TTTACTTATTTCCAGGAAGAATTTATACAATACTCTTAATTCCACAATATATGGTGAGTTATAAT
1 TTTACTTATTTCCAAGAAGAATTGATACAATACTCTTAACCCCACAATATATGGTGAGTTATAAT
31664 TGCTCTTAACGGAAAGGTCACTATCTTATGTAATACTATATAAAATCATGAACTCAAAAATTCTA
66 TGCTCTTAACGGAAAGGTCACTATCTTATGTAATACTATATAAAATCATGAACTCAAAAATTCTA
31729 A
131 A
* * *
31730 TTTACTTATTTCTAAGAAGAGTTGATACAATATTCTTAACCCCACAATATATGGTGAGTTATAAT
1 TTTACTTATTTCCAAGAAGAATTGATACAATACTCTTAACCCCACAATATATGGTGAGTTATAAT
*
31795 TGCTCTTAACGGAAAGGTCACTATCTTATGTAATACTATATAAAATCATGAATTCAAAAATTCTA
66 TGCTCTTAACGGAAAGGTCACTATCTTATGTAATACTATATAAAATCATGAACTCAAAAATTCTA
31860 A
131 A
31861 TT
1 TT
31863 CGCTCAATGG
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (131 bp):
TTTACTTATTTCCAAGAAGAATTGATACAATACTCTTAACCCCACAATATATGGTGAGTTATAAT
TGCTCTTAACGGAAAGGTCACTATCTTATGTAATACTATATAAAATCATGAACTCAAAAATTCTA
A
Found at i:32602 original size:333 final size:330
Alignment explanation
Indices: 31991--35717 Score: 4137
Period size: 333 Copynumber: 11.2 Consensus size: 330
31981 CCAACACTCC
** * * *
31991 AGCCACATTGCATTTAAGGATTTGTTTTTATTAGTATCGGAATCTTGTTTCGATTTAATTAAAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
**
32056 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTCTGGTGT
66 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTT-TGGCAT
* * * * *
32121 TAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGAAAAATTTTTTGGGCCA--TTT
130 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAA-TTTTCGGGTCATTTTT
* * *
32184 TTTGCAAAATTTTAGCCGAAAGCGTGTACAAAACATCACAGGTTTTTGGCTAAAAAAGCGTTTCG
194 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAAAGCGTTTCG
* * *
32249 GGGCCCCGTCTCAATTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTTTATTCATCTA
258 AGG-CCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTA
32314 ATAAACTCTT
322 ATAAA-TCTT
** *
32324 AAACACATTGCATTTAAGAATTTGTTTTTACGAGCATCTGAAT-TGTGTTTCGATTTAATTAGAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAA
* *
32388 ATTAATTCAG-AAAACTATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATATTTTGGACA
65 ATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTGG-CA
* *
32452 TTGAATTATATATATTTAATGAGTA-TTTATCCAAAAATTGAGGAAAAATCTTTCGGGTCATTTT
129 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAT-TTTCGGGTCATTTT
* *
32516 TATTTGCAAAATTTTAGCCAAAATCGTGTACTAACTATCACAGGTTTTTGGCTAAAAAAGCGTTT
193 T-TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAAAGCGTTT
* *
32581 CGAGGCCCGTCTCAGTTTTGCATGATTTTAGGCACCGAGACTCCTTGAAATATCTATAATCATCT
256 CGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCT
*
32646 AACTAAATCTC
321 AA-TAAATCTT
* * * *
32657 A-CTCGCATTGCATTTAAGGCCTTT-TTTCTATGAGCATCTGAATCTTGTTTCGATTTAATTAGA
1 AGC-CACATTGCATTTAAGG-ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
* * * * * * * *
32720 AACTAATTCATAAAAAAATATGGAAAACGATGTTAGAAGCGAGAAAAGTCCTCCAATCCTTTTGC
64 AATTAATTCA-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTTGG
* * *
32785 CATTAAATAATATATATTTTACGAGTATTTAATCCAAAAATTGAGGAAAAATTTTTCGGGTCA-T
127 CATTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAA-TTTTCGGGTCATT
* * *
32849 TTTTTTGCAAAA-TTTGGCCGAAATCGTGTACTAACCATCACGGTTTTTGACTAAAAAGGCGTTT
191 TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTT
* * ** ** * * * *
32913 TGGGGCCTTTGAACAGTTTTGCATGATTTTTGG-AGTCGATACTCCTTGAAATGTCTATATTTAT
256 CGAGGCCCGT-CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCAT
32977 CTAATAAAATCTT
319 CTAAT-AAATCTT
*
32990 AGCCACATTGCATTTAAGGATTT-TTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * **
33054 TTAATTCAGAAAAAATATGAAAAATGATATTAAAAGCATGTAAAGTCCTCCAATCTTTTTGGGGT
66 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTTGGCAT
* ** * * * * **
33119 TAAATTATATAGATTCCATGAGCATTTTATCCAGAAATTAAAGAAAAAATTTT-GGG-CCGTTTT
130 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATT-GAGGAAAAATTTTCGGGTCATTTTT
* * * * *
33182 TTTACAAAATTTTAGCCGAAAGCGTGTACAAAACATCACGGTTTTTGGCTAAAAACAGAGTTTCG
194 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAA-AGCGTTTCG
* * * * *
33247 GGGCCCGTCTCAATTTTGCATGA-TTTTAGCACCGAGACTCCTTGAAATATTTTTATTCATCTAA
258 AGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAA
33311 TAAACTCTT
323 TAAA-TCTT
* * *
33320 AGCCACATTACATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTACAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * **
33385 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAACGTGAAAAGTCCTCTAATTTTTGTGGTGT
66 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTT-TGGCAT
* * * ** * **
33450 TAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGGAAAAATTTTTTGGAC-CGTTT
130 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGA-GGAAAAATTTTCGGGTCATTTTT
* * * ** * *
33514 TTTGCAGAATTTTAGCCGAAAGT-GTATACAAAATATCACGGTTTTTGGTTAAAAAAGTGTTTCG
194 TTTGCAAAATTTTAGCCGAAA-TCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCG
* * * ** * *
33578 GGGCCCCGTCCCAATTTTGCATGATTTTTGGCGTCGAGACTCCGTGAAATATC-ATTATTCATCC
258 AGG-CCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTA-TATTCATCT
33642 AATAAACTCTT
321 AATAAA-TCTT
* ** ** * *
33653 AGCCACATTGCATTTAAGGATTTGTTTTTACCAGCATCAAAATAGTGTTTCGATTCAATTACAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* *** *
33718 TTAATTCAGAAAAAAATATGAAAAACGATATTTAAAGCGTGAAAAGTCCTCCAACCCTTTGGACG
66 TTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTGG-CA
* * * * *
33783 TTGAATTCTAAATATTTTATGAGTAGTTTATCCAAAAATGGAGGAAAAAAATTTT-GGGAT-ATT
129 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGG--AAAAATTTTCGGG-TCA--
* * *
33846 TTTTTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGATTTTGGCCAAAAAAGC
189 --TTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGC
* * * * * * *
33911 GTTACGAGACCCGTCCCAGTTTTTCTTG-TTTTTGGGCACCGAGACTCCTTGAAATATGTATAAT
252 GTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTT-GGCACCGAGACTCCTTGAAATATCTATATT
* *
33975 CTTCTAATTAAATCTC
316 CATCTAA-TAAATCTT
* * ** ** *
33991 ACCCACATTGTATTTAAGGCCTTACTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
** * *
34056 TTAATTC-GTAAAAAATATGAAAATTGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTTGCA
66 TTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTTGGCA
* * * *
34120 TTAAATAATATATAATTTATGAGTATTTTATCCCAAAATTGAGTAAAAAAATTTTCGGGTCATTT
129 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAG--GAAAAATTTTCGGGTCATTT
* * ** * * *
34185 TTTTTACAAAATTTTAGCCGAGATCGTGTACTAACCATCATAGTTTTTTGCTAAAAAAACGTTTT
192 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTC
* * ** * * * *
34250 G-GGGCCTTAGAACAGTTTTGCATGATTTTTGG-AGCCTAGACTCCTTGAAATGTCTATATTTAA
257 GAGGCCCGT--CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCAT
34313 CTAATAAAATCTT
319 CTAAT-AAATCTT
* * *
34326 AGCCACATTGCATTTAAGGATTT-TTTTAACGAGCATCTGAATCTTGTTTCCATTTACTTAGAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * * *
34390 TTAATTCTGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAATCCACAAATCTTTTGGACA-
66 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTGG-CAT
* * * *
34454 TACAATTATATATATTTTATGAGTATTTTATCCAAAAAATGAGGAAAATTTTTTCTGGTCTTTTT
130 TA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAA-ATTTTCGGGTCATTTT
* * * *
34519 TTTTGGCAAAATTTTAGCCAAAATTGTATACTAACCATCACGGCTTTTGGCTAAAAAAGCGTTTC
193 TTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTC
* ** * *
34584 GAGACCCGTCTCAGTTTTGCATGATTTTTGGTGCCGAGTCTCCTTGAAATATCTATAATCATCTA
257 GAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTA
*
34649 ATTAAATCTC
322 A-TAAATCTT
* ** * ** * *
34659 ACCCACATTGCATTTAAGGCCTTATTTTTATAAGCATCTGAATCTTGTCTCGATTAAATTAGAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * *
34724 TTAATTC-GTAAAAAATATGAAAAACGATATTAAAAGCGAGAGAAGTCTTCCAATCTTTTTGGCA
66 TTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTTGGCA
* * * * *
34788 TTAAATAATATATAATTTACGAGTA-TTTATCCCAAAATTGAGGAAAAAATTTTCAGGTCA-TTT
129 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGG-AAAAATTTTCGGGTCATTTT
* *
34851 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAT-GCTAAAAAAGCATTTT
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT-TGGCTAAAAAAGCGTTTC
* * ** * *
34915 G-GGGCCTTAGAACAGTTTTGCATGATTTTTGG-AGTCGAGACTCCTTGAAATGTCTATATTCAT
257 GAGGCCCGT--CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCAT
*
34978 CTAAGAAATCTT
319 CTAATAAATCTT
*
34990 AGCCACATTGCATTTAAGGATTT-TATTTTACGAGCATCTGAATCTTGTTTCGATTTAATTACAA
1 AGCCACATTGCATTTAAGGATTTGT-TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
35054 ATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGTGTGAAAATTCCTCCAATCTTTTGG-AC
65 ATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTGGCA-
* *
35118 GTATAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCTTTT
129 TTA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAA-TTTTCGGGTC--AT
* ** *
35183 TTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGACTTTTGGCTAAAAAAACGTT
190 TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTT
* * * *
35248 TCGAGGCCCGTCTCAGTTTTGCATGATTTTTGACGCCGAGTCTCCTTGAAATATCTATAATCATC
255 TCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATC
*
35313 TAATTAAATCTC
320 TAA-TAAATCTT
* ** * *
35325 ACCCACATTGCATTTAAGGCCTTG-TTTTATGAGCATCTTAATCTTGTTTCGATTTAATTAGAAA
1 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * *
35389 TTAATTC-GTAAAAAAATATGAAAAATGATATTCAAAGCGAGAAAAGTCCTCCAATCTTTTTGGC
66 TTAATTCAG--AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTTGGC
* * * * **
35453 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTTTGGTCATTTT
128 ATTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTCGGGTCATTTT
* * * * *
35518 TTTTGCAAAATTTTAGCCGAAATCATGTACTAATCATCACGGTTTTTTGCTACAAAAA-CATTTT
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTA-AAAAAGCGTTTC
* * ** * * *
35582 G-GGGCCTTAGAACAGTTTTGCATGATTTTT-GAAGCCGAGACTCTTTGAAATGTCTATATTCAT
257 GAGGCCCGT--CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCAT
*
35645 CTAATAAAATTTT
319 CTAAT-AAATCTT
* * *
35658 AGCCACATTGCTTTTAAGGATTTTTTTTTTACGTGCATCTGAATCTTGTTTCGATTTAAT
1 AGCCACATTGCATTTAAGGA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
35718 AAATTAATTC
Statistics
Matches: 2856, Mismatches: 438, Indels: 198
0.82 0.13 0.06
Matches are distributed among these distances:
329 5 0.00
330 94 0.03
331 506 0.18
332 380 0.13
333 599 0.21
334 599 0.21
335 350 0.12
336 55 0.02
337 94 0.03
338 114 0.04
339 60 0.02
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (330 bp):
AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTGGCATT
AAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTCGGGTCATTTTTTT
TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGG
CCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAA
ATCTT
Found at i:34389 original size:334 final size:331
Alignment explanation
Indices: 31991--35717 Score: 4195
Period size: 334 Copynumber: 11.2 Consensus size: 331
31981 CCAACACTCC
** * * *
31991 AGCCACATTGCATTTAAGGATTTGTTTTTATTAGTATCGGAATCTTGTTTCGATTTAATTAAAAA
1 AGCCACATTGCATTTAAGGATTT-TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
**
32056 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTCTGGTG
65 TTAATTC-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTT-TGGCA
* * * * * *
32120 TTAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGAAAAATTTTTTGGGCCA--TT
128 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTT
* * *
32183 TTTTGCAAAATTTTAGCCGAAAGCGTGTACAAAACATCACAGGTTTTTGGCTAAAAAAGCGTTTC
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAAAGCGTTTC
* *
32248 GGGGCCCCGTCTCAATTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTTTATTCATC
257 GGGG-CCCGTCTCAGTTTTGCATGATTTTTGG-AGCCGAGACTCCTTGAAATATCTATATTCATC
*
32312 TAATAAACTCTT
320 TAATAAAATCTT
** *
32324 AAACACATTGCATTTAAGAATTTGTTTTTACGAGCATCTGAAT-TGTGTTTCGATTTAATTAGAA
1 AGCCACATTGCATTTAAGGATTT-TTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAA
* *
32388 ATTAATTC-AGAAAACTATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-ATTTTGGAC
64 ATTAATTCGA-AAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG-C
* *
32451 ATTGAATTATATATATTTAATGAGTA-TTTATCCAAAAATTGAGG-AAAAATCTTTCGGGTCATT
127 ATTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAAT-TTTCGGGTCATT
* *
32514 TTTATTTGCAAAATTTTAGCCAAAATCGTGTACTAACTATCACAGGTTTTTGGCTAAAAAAGCGT
191 TTT-TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAAAGCGT
* * *
32579 TTCGAGGCCCGTCTCAGTTTTGCATGATTTTAGGCA-CCGAGACTCCTTGAAATATCTATAATCA
254 TTCGGGGCCCGTCTCAGTTTTGCATGATTTTTGG-AGCCGAGACTCCTTGAAATATCTATATTCA
*
32643 TCTAACT-AAATCTC
318 TCTAA-TAAAATCTT
* * * *
32657 A-CTCGCATTGCATTTAAGGCCTTTTTTCTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
1 AGC-CACATTGCATTTAAGG-ATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * * * * * *
32721 ACTAATTCATAAAAAAATATGGAAAACGATGTTAGAAGCGAGAAAAGTCCTCCAATCCTTTTGCC
64 ATTAATTC--GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGC
* * * *
32786 ATTAAATAATATATATTTTACGAGTATTTAATCCAAAAATTGAGGAAAAATTTTTCGGGTCA-TT
127 ATTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTT
* * * *
32850 TTTTTGCAAAA-TTTGGCCGAAATCGTGTACTAACCATCACGGTTTTTGACTAAAAAGGCGTTTT
192 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTC
** ** * * * *
32914 GGGGCCTTTGAACAGTTTTGCATGATTTTTGGAGTCGATACTCCTTGAAATGTCTATATTTATCT
257 GGGGCCCGT-CTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCT
32979 AATAAAATCTT
321 AATAAAATCTT
*
32990 AGCCACATTGCATTTAAGGATTTTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
1 AGCCACATTGCATTTAAGGATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
* * * **
33055 TAATTCAGAAAAAATATGAAAAATGATATTAAAAGCATGTAAAGTCCTCCAATCTTTTTGGGGTT
66 TAATTC-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCATT
* ** * * * * **
33120 AAATTATATAGATTCCATGAGCATTTTATCCAGAAATTAAAGAAAAAATTTT-GGG-CCGTTTTT
130 AAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTT
* * * * *
33183 TTACAAAATTTTAGCCGAAAGCGTGTACAAAACATCACGGTTTTTGGCTAAAAACAGAGTTTCGG
195 TTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAA-AGCGTTTCGG
* * * * *
33248 GGCCCGTCTCAATTTTGCATGATTTTAGCA-CCGAGACTCCTTGAAATATTTTTATTCATCTAAT
259 GGCCCGTCTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCTAAT
*
33312 AAACTCTT
324 AAAATCTT
* * *
33320 AGCCACATTACATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTACAAA
1 AGCCACATTGCATTTAAGGATTT-TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * **
33385 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAACGTGAAAAGTCCTCTAAT-TTTTGTGGTG
65 TTAATTC-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTT-TGGCA
* * * * ** * **
33449 TTAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGGAAAAATTTTTTGGAC-CGTT
128 TTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTT
* * * ** * *
33513 TTTTGCAGAATTTTAGCCGAAAGT-GTATACAAAATATCACGGTTTTTGGTTAAAAAAGTGTTTC
193 TTTTGCAAAATTTTAGCCGAAA-TCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTC
* * * * *
33577 GGGGCCCCGTCCCAATTTTGCATGATTTTTGGCGTCGAGACTCCGTGAAATATC-ATTATTCATC
257 GGGG-CCCGTCTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTA-TATTCATC
* *
33641 CAATAAACTCTT
320 TAATAAAATCTT
* ** ** * *
33653 AGCCACATTGCATTTAAGGATTTGTTTTTACCAGCATCAAAATAGTGTTTCGATTCAATTACAAA
1 AGCCACATTGCATTTAAGGATTT-TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* **
33718 TTAATTCAGAAAAAAATATGAAAAACGATATTTAAAGCGTGAAAAGTCCTCCAA-CCCTTTGGAC
65 TTAATTC-G-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG-C
* * * * * *
33782 GTTGAATTCTAAATATTTTATGAGTAGTTTATCCAAAAATGGAGGAAAAAAATTTT-GGGAT-AT
127 ATTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGG-AAAAAATTTTCGGG-TCA-
* * *
33845 TTTTTTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGATTTTGGCCAAAAAAG
189 ---TTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAG
* * * * * * *
33910 CGTTACGAGACCCGTCCCAGTTTTTCTTG-TTTTTGG-GCACCGAGACTCCTTGAAATATGTATA
251 CGTTTCGGGGCCCGTCTCAGTTTTGCATGATTTTTGGAG--CCGAGACTCCTTGAAATATCTATA
* * * *
33973 ATCTTCTAATTAAATCTC
314 TTCATCTAATAAAATCTT
* * * ** *
33991 ACCCACATTGTATTTAAGGCCTTACTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
1 AGCCACATTGCATTTAAGG-ATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
** * *
34056 TTAATTCGTAAAAAATATGAAAATTGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTTGCAT
65 TTAATTCG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCAT
* * * *
34121 TAAATAATATATAATTTATGAGTATTTTATCCCAAAATTGAGTAAAAAAATTTTCGGGTCATTTT
129 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAG-GAAAAAATTTTCGGGTCATTTT
* * ** * * *
34186 TTTTACAAAATTTTAGCCGAGATCGTGTACTAACCATCATAGTTTTTTGCTAAAAAAACGTTTTG
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCG
* ** * * * *
34251 GGG-CCTTAGAACAGTTTTGCATGATTTTTGGAGCCTAGACTCCTTGAAATGTCTATATTTAACT
258 GGGCCCGT--CTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCT
34315 AATAAAATCTT
321 AATAAAATCTT
* * *
34326 AGCCACATTGCATTTAAGGATTTTTTTAACGAGCATCTGAATCTTGTTTCCATTTACTTAGAAAT
1 AGCCACATTGCATTTAAGGATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
* * *
34391 TAATTCTGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAATCCACAAATC-TTTTGGACA-
66 TAATTC-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG-CAT
* ** * *
34454 TACAATTATATATATTTTATGAGTATTTTATCCAAAAAATGAGGAAAATTTTTTCTGGTCTTTTT
129 TA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTT
* * * *
34519 TTTTGGCAAAATTTTAGCCAAAATTGTATACTAACCATCACGGCTTTTGGCTAAAAAAGCGTTTC
193 TTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTC
* * * * *
34584 GAGACCCGTCTCAGTTTTGCATGATTTTTGGTGCCGAGTCTCCTTGAAATATCTATAATCATCTA
257 GGGGCCCGTCTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCTA
* *
34649 ATTAAATCTC
322 ATAAAATCTT
* * * ** * *
34659 ACCCACATTGCATTTAAGGCCTTATTTTTATAAGCATCTGAATCTTGTCTCGATTAAATTAGAAA
1 AGCCACATTGCATTTAAGG-ATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * *
34724 TTAATTCGTAAAAAATATGAAAAACGATATTAAAAGCGAGAGAAGTCTTCCAATCTTTTTGGCAT
65 TTAATTCG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCAT
* * * * *
34789 TAAATAATATATAATTTACGAGTA-TTTATCCCAAAATTGAGGAAAAAATTTTCAGGTCA-TTTT
129 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTT
* *
34852 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAT-GCTAAAAAAGCATTTTG
194 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT-TGGCTAAAAAAGCGTTTCG
* ** * *
34916 GGG-CCTTAGAACAGTTTTGCATGATTTTTGGAGTCGAGACTCCTTGAAATGTCTATATTCATCT
258 GGGCCCGT--CTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCT
*
34980 AA-GAAATCTT
321 AATAAAATCTT
*
34990 AGCCACATTGCATTTAAGGATTTTATTTTACGAGCATCTGAATCTTGTTTCGATTTAATTACAAA
1 AGCCACATTGCATTTAAGGATTTT-TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* *
35055 TTAATTCAGAAAAAATATGAAAAACGATATTAAAAGTGTGAAAATTCCTCCAATC-TTTTGG-AC
65 TTAATTC-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCA-
* * *
35118 GTATAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCTTTT
128 TTA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTC--AT
* ** *
35183 TTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGACTTTTGGCTAAAAAAACGTT
190 TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTT
* * *
35248 TCGAGGCCCGTCTCAGTTTTGCATGATTTTT-GACGCCGAGTCTCCTTGAAATATCTATAATCAT
255 TCGGGGCCCGTCTCAGTTTTGCATGATTTTTGGA-GCCGAGACTCCTTGAAATATCTATATTCAT
* *
35312 CTAATTAAATCTC
319 CTAATAAAATCTT
* ** * * *
35325 ACCCACATTGCATTTAAGGCCTTGTTTTATGAGCATCTTAATCTTGTTTCGATTTAATTAGAAAT
1 AGCCACATTGCATTTAAGGATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
* * *
35390 TAATTCGTAAAAAAATATGAAAAATGATATTCAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCAT
66 TAATTCG--AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCAT
* * * * **
35455 TAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGG-AAAAATTTTTTGGTCATTTTT
129 TAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTT
* * * * *
35519 TTTGCAAAATTTTAGCCGAAATCATGTACTAATCATCACGGTTTTTTGCTACAAAAA-CATTTTG
194 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTA-AAAAAGCGTTTCG
* ** * * *
35583 GGG-CCTTAGAACAGTTTTGCATGATTTTTGAAGCCGAGACTCTTTGAAATGTCTATATTCATCT
258 GGGCCCGT--CTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCT
*
35647 AATAAAATTTT
321 AATAAAATCTT
* *
35658 AGCCACATTGCTTTTAAGGATTTTTTTTTTACGTGCATCTGAATCTTGTTTCGATTTAAT
1 AGCCACATTGCATTTAAGGA--TTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
35718 AAATTAATTC
Statistics
Matches: 2860, Mismatches: 445, Indels: 176
0.82 0.13 0.05
Matches are distributed among these distances:
329 2 0.00
330 95 0.03
331 509 0.18
332 380 0.13
333 601 0.21
334 602 0.21
335 346 0.12
336 52 0.02
337 102 0.04
338 113 0.04
339 58 0.02
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (331 bp):
AGCCACATTGCATTTAAGGATTTTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
TAATTCGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCATTA
AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTT
TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGGGG
CCCGTCTCAGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATATCTATATTCATCTAATAA
AATCTT
Found at i:38038 original size:332 final size:333
Alignment explanation
Indices: 36319--40707 Score: 4802
Period size: 333 Copynumber: 13.2 Consensus size: 333
36309 AAACATAACC
* * *
36319 TTAAGGATTTTTTTTTACTAGCAATCTGAATCTTGTTTCGATTTAATTACAAATTAATTCAGAAA
1 TTAAGGATTTGTTTTTACGAGC-ATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAA
* * *
36384 AAATATGAAAAACGATATTAAAAGCGTTAAAAGTCCTCCAATCTTTTGG-ACTTAAAATTATATA
65 AAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTT-AAATTATATA
* *
36448 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCTTTTTTTTTGCAAAATT
129 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTC-ATTTTTTTGCAAAATT
* * * * *
36513 TTAGCCTAAATCGTGTACTAACCATCACGGATTTTGGCTAAAAAAACGTTTCGATG-CCCATCTC
193 TTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTC
* * * * *
36577 AGTTTTGCATGATTTTTCGCACCGAGACTCCTTGAAATATCTATAATCATCTAATTAAATCTCAC
258 AGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAG
36642 CCACATTGCAT
323 CCACATTGCAT
* * * *
36653 TTAA-GACCTTGTTTTTATGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCGGAAA
1 TTAAGGA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAA
* * * * * * *
36717 AATTACGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCATTTGGGCA-TTAAATAATATA
65 AAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA-CCTTTTGGAAGTTAAATTATATA
* * *
36781 TAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAAAATTTTCGGGTCATTTTTTTGCAAAATT
129 TATTTTATGAGTATTTTATCCAAAAATTGAGG-AAAAAATTTTCGGGTCATTTTTTTGCAAAATT
* * * * ** *
36846 TTAGCC---ATC----ACGT-----T-----TTTTT-ACTAAAAAAACGTTTTGGGGCCTTAGAA
193 TTAGCCAAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCC-CCG-T
* *
36893 CT--GTTTTGCATGATTTTTGG-AGCCGAGACTCCTTGAAATGTCTATATTTATCTAATAAAATC
255 CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATC
36955 TTAGCCACATTGCAT
319 TTAGCCACATTGCAT
* * *
36970 TTAAGAAATTT-TTTTTCACGAGCATATGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGGA
1 TTAAG-GATTTGTTTTT-ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAA
* * * * *
37034 AACATATGAAAAACGATATTAAAAGCGTTAAAAGTCCTCCAATCTTTCGGAAGTTGAATTATATA
64 AAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATA
* *
37099 TATTTTATGAGGATTTTATCCAATAATTGAGGAAAAAATTTTCGGGTCATTTTTTTTCGGCAAAA
129 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCA-TTTTTTT--GCAAAA
* * *
37164 TTTTAGCCAAAATTGTGTATTAACCATCACGGTTTTTGGCTATAAAAGCGTTTCGAGG-CCCGTC
191 TTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTC
* * * * *
37228 TCACTGTTGCATGATTTTTGG-AGCCAAGACTCCTTGAAATGTCTATATTCATCTAATAAAATCC
256 TCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCT
37292 TAGCCACATTGCAT
320 TAGCCACATTGCAT
* *
37306 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGATATTATTTCAGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
* * * * * * * *
37371 AAAATGAAAAATGATATTAAAAGCATGTAAAGTCCTCCAATCTTTTAGTAGTTAAATTATATAGA
66 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATATA
* * * * * * * * *
37436 TTTCATAAGCATTTTATCTAGAAATTAAAGAATAAAAATTT-GGATCATTTTTTTGCAAAATTTT
131 TTTTATGAGTATTTTATCCAAAAATTGAGGAA-AAAATTTTCGGGTCATTTTTTTGCAAAATTTT
* ** * * * * *
37500 AGCCGAAAGT-GTGTAGAAAACATCACGGTTTTTGGCTAGAAAATCGTTTCGGGGCCTCGTCTCA
195 AGCC-AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCA
* * * * * *
37564 ATTTTGCATGATTTTTAGCATCGAGACACCTTGAAATATCTTTATTCATCTAATAAACTCTTAGC
259 GTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGC
37629 CACATTGCAT
324 CACATTGCAT
37639 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
* * * *
37704 AATATGAAAAACGTTATTAAAAGCGTGAAATGTCCTCCAACCTTTTGGAAGTTGAATTATAAATA
66 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATATA
*
37769 TTTTATGAGTACTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTA
131 TTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTA
* * * **
37834 GCCAAAATTGTATACTAACCATCACGGTTTTTGGCTAAAAAGGCGTTTCGAGG-CTTGTCTCAGT
196 GCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCAGT
* * * * * *
37898 TTTGAATGATTTTTGGCACCGAGACTCCTTGAAATATCTATAATCATCTAATTAAGTCTCACCCA
261 TTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCA
*
37963 AATTGCAT
326 CATTGCAT
** * *
37971 TTAAGGCCTTGTTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT-TGTAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAA
* * * *
38035 AAATATGAAAAAACGATGA-TAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCA-TTAAATAATA
65 AAATATG-AAAAACGAT-ATTAAAAGCGTGAAAAGTCCTCCAA-CCTTTTGGAAGTTAAATTATA
* * * *
38098 TATAATTTACGAGTATTTTATCCCAAAATTGAGG-AAAAATTTTCTGGTCATTTTTTTGCAAAAT
127 TATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAAT
* ** * * * *
38162 TTTAGACGGAATCGTGTAGTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTGAGGCACCCAGT
192 TTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGC-CCC-GT
* * ** * *
38227 -ACAGTTTTGCCTGATTTTT-ATAGCCGAGACTCCTTGAAATTTCTATATTTATCTAATAAAATC
255 CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATC
38290 TTAGCCACATTGCAT
319 TTAGCCACATTGCAT
* *
38305 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGATATTAATTTAGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
* **** *
38370 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTCTTGTTAAATTATATACA
66 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATATA
* * * * * ** *
38435 CTTTATAAGTATGTTATCCAAAAATTGAGGAAAAATTTTTCAGG-CCGTTTTTTGCAGAATTTTA
131 TTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTA
* * * * * * *
38499 GCC-AAATACATGTACAAAACATCACTGTTTTTGGCTAAAAAAGCATTTCGGGGCCCCGTCTCAA
196 GCCAAAAT-CGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCAG
* * * * * * * *
38563 TTTTGCATGATTTTTGGCGCCAACACTTCTTGATATATCTTTATTCATCTAATAAACTCTTAGCT
260 TTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCC
*
38628 ACATTACAT
325 ACATTGCAT
* * *
38637 TTAAGGATTTATTTTTACGAGCATCTGAAT-TGTGTTTAGATTTAATCAGAAATTAATTCAGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAAATTAATTCAG-AA
* * * * *
38701 AAAATATGAAAAACGATATTTAAAGCGTGAAATGTCCTCCAACCTTTTGGATGTTGAATTATAAA
64 AAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATA
* * *
38766 TATTTTATGAGTACTTTATCCAGAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTTGAAAAATT
129 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCA-TTTTTTTGCAAAATT
* * *
38831 TTAGCCAAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAAAGTGTTTTGAGG-CCCGTCTC
193 TTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTC
* * * * * * *
38895 TGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAATTATCTCTAATCATCTAATTAAATCTCAA
258 AGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAG
* *
38960 TCACTTTGCAT
323 CCACATTGCAT
** * * * * *
38971 TTAAGGCCTTGTTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTATAAACTAATTCATATAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
* * * * *
39036 AATATGAAAAACGATATTAAAAACGAGAAAAGTCCTCCAATCTTTTTGGCA-TTAAATAATATAT
66 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA-CCTTTTGGAAGTTAAATTATATAT
* * ** * *
39100 ATTTTACGAGTATTTTATCCCAAAATTGACAAAAAAAAAATTTCGGGTCA-TTTTTTACAAAATT
130 ATTTTATGAGTATTTTATCCAAAAATTG--AGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATT
* * * * * *
39164 TTAGCCGAAATCGT-TGACTAACCATCATGGTTTTTTGCTAAAAAAAGCGTTTTGGGGACCCAGT
193 TTAGCCAAAATCGTGT-ACTAACCATCACGGTTTTTGGCT-AAAAAAGCGTTTCGAGG-CCCCGT
* * * ** * *
39228 -ACAGTTTTGCCTCATTTTT-ATAGCCGAGACTCCTTGAAATGTCTATATTCATCTATTAAAATC
255 CTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATC
39291 TTAGCCACATTGCAT
319 TTAGCCACATTGCAT
* *
39306 TTAAGGAGTTGCTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA-AATATTAATTCAGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA-ATTAATTCAGAAA
* ** **** *
39370 AAATATGAAAAACGATATTAAAATCGTGAAAAGTCCTCCAATATTTTTCTTGTTAAATTATATAC
65 AAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATAT
* * * ** ** *
39435 ATTTTATAAATATTTTATCCAAAAATTGAGGAAAAAGTTTTCAAG-CCGTTTTTTGCAAAAGTTT
130 ATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTT
* * * ** * * * *
39499 AGCCAAAAACGTGTACAAAACATCACATTTTTTTGCTAAAAAAGCATTTCGGGGCCCCGTCTCAA
195 AGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCAG
* * * *
39564 TTTTGCATGATTTTTGGCACCGAGACTTCTTGATATATCTTTATTCATCTAATAAACTCTTAGCC
260 TTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCC
** *
39629 GTATTACAT
325 ACATTGCAT
* * *
39638 TTAAGGATTTGTTTTTACGAGCATCTGAAT-TGTATTTAGATTTAATTAGAAATTAATTCATAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAAATTAATTCA-GAA
* * * * * *
39702 AAAAAATGAAAAACGATATTTAAAGCGTGAAATGTCCTCCAACCTTTTGGACGTTGAATTATAAA
64 AAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATA
*
39767 TATTTTATGAGTACTTTATCCAAAAATTGAGGAAAAAATTTT-GGGTCATTTTTTTGCAAAATTT
129 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTT
* * *
39831 TAGCCAAAATCGTGTACGT---TATCACGGTTTTTGGCTAAAAAAGTGTTTCGATG-CCCGTCTC
194 TAGCCAAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTC
* * * *
39892 AGTTTTGCATGATTTTTGACACCGAGACTCCTTGAAATATCTATAATT-ATTTAATTAAATCTCA
258 AGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTAT-ATTCATCTAATAAAATCTTA
*
39956 CCCACATTGCAT
322 GCCACATTGCAT
* * *
39968 TTAAGG-TCTTGTTTTTATGAGCATCTGAATCCTGTTTCGATTTAATTAGAAATTAATTCATAAA
1 TTAAGGAT-TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAA
* * * * * *
40032 AAATATGAAAAACGATATTAGAAGCGAGAAAGGTCCTCCAATCTTTTTGGCA-TTAAATAATATA
65 AAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA-CCTTTTGGAAGTTAAATTATATA
* * * **
40096 TATTTTACGATTATTTTATCCCAAAATTGA-GAAAAGAAAATTCGGGTCATTTTTTTGCAAAATT
129 TATTTTATGAGTATTTTATCCAAAAATTGAGGAAAA-AATTTTCGGGTCATTTTTTTGCAAAATT
* * * * * * *
40160 TTAGCCGAAATCGTGTACTAACAACCATCACGGTTTTTCGCTAATAAAGCATTTTGGGGACCCAG
193 TTAGCCAAAATCGTGTACT---AACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGG-CCCCG
* * ** *
40225 T-ACAGTTTTGCCTGATTTTT-ATAGCCGAGACTCCTTGAAATGTCTATATTCATCTAATAAAAT
254 TCTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTATATTCATCTAATAAAAT
40288 CTTAGCCACATTGCAT
318 CTTAGCCACATTGCAT
* * *
40304 TTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGGTTTAATTAGATATTAATTCAGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
* * * **** *
40369 ATTATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATCTTTTTCTTGTTAAATTATATACA
66 AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATATA
* * * * ** * *
40434 TTTTATAAGTATTTTATCCAAAAATTGAGGAAAAATTTTTC-AGCCCGTTTTTTGCAGAACTTTA
131 TTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTA
* * * * * ** * *
40498 GCCGAAAA-CGTGTACAAAACATCACGGTTTTTTGCTAAAAAGGCATTTCG-GGGTCCGTCTTAA
196 GCC-AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCAG
* * * * * * * *
40561 TTTTACATGATTTTTTGCGCCGAGACTTCTTGATATATCTTTATTCATCTAATAAACTCTTAGAC
260 TTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCC
*
40626 ACATTACAT
325 ACATTGCAT
* ** * * *
40635 TTAAGGATTTATTTTTACGATTATTTGAAT-TGTGTTTAGATTTTATTAGAAATTAATTCAGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAAATTAATTCAGAAA
40699 AAATATGAA
65 AAATATGAA
40708 TTCATAAGAC
Statistics
Matches: 3379, Mismatches: 570, Indels: 215
0.81 0.14 0.05
Matches are distributed among these distances:
316 17 0.01
317 103 0.03
318 125 0.04
319 3 0.00
320 14 0.00
322 1 0.00
323 2 0.00
326 3 0.00
327 2 0.00
328 5 0.00
329 80 0.02
330 172 0.05
331 167 0.05
332 560 0.17
333 1000 0.30
334 342 0.10
335 459 0.14
336 299 0.09
337 25 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (333 bp):
TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAA
AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAACCTTTTGGAAGTTAAATTATATATA
TTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTA
GCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCCGTCTCAGT
TTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCA
CATTGCAT
Found at i:38454 original size:666 final size:663
Alignment explanation
Indices: 31990--40707 Score: 7805
Period size: 666 Copynumber: 13.1 Consensus size: 663
31980 GCCAACACTC
* ** * * *
31990 CAGCCACATTGCATTTAAGGATTTGTTTTTATTAGTATCGGAATCTTGTTTCGATTTAATTAAAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* *
32055 ATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT-TTTTCTGGT
66 ATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTT-TGGC
* * * * * * * * * *
32119 GTTAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGAAAAATTTTTTGGGCCA-TT
129 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAA-TTTTCGGGTCATTT
* * * * * *
32183 TTTTGCAAAATTTTAGCCGAAAGCGTGTACAAAACATCACAGGTTTTTGGCTAAAAAAGCGTTTC
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTTGCTAAAAAAGCATTTT
* * * *
32248 GGGGCCCCGTCTCAATTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAATATCTTTATTCATC
257 GGGGCCCCGTCACAGTTTTGCATGATTTTT-GTAGCCGAGACTCCTTGAAATATCTATATTCATC
* ** *
32312 TAATAAACTCTTAAACACATTGCATTTAAGAATTTGTTTTTACGAGCATCTGAAT-TGTGTTTCG
321 TAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCG
*
32376 ATTTAATTAGAAATTAATTCAG-AAAACTATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCA
385 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCA
* ** * *
32440 ATATTTTGGACATTGAATTATATATATTTAATGAGTA-TTTATCCAAAAATTGAGG-AAAAATCT
450 ATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAAT-T
*
32503 TTCGGGTCATTTTTATTTGCAAAATTTTAGCCAAAATCGTGTACTAACTATCACAGGTTTTTGGC
514 TTCGGGTCA-TTTT-TTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCAC-GGTTTTTGGC
*
32568 TAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTAGGCACCGAGACTCCTTGAAATA
576 TAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATA
* *
32633 TCTATAATCATCTAACTAAATCT
641 TCTATATTCATCTAATTAAATCT
* * *
32656 CA-CTCGCATTGCATTTAAGGCCTT-TTTTCTATGAGCATCTGAATCTTGTTTCGATTTAATTAG
1 CAGC-CACATTGCATTTAAGGACTTGTTTT-TACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * * * * *
32719 AAACTAATTCATAAAAAAATATGGAAAACGATGTTAGAAGCGAGAAAAGTCCTCCAATCCTTTTG
64 AAATTAATT-A-GAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTG
* * * *
32784 CCATTAAATAATATATATTTTACGAGTATTTAATCCAAAAATTGAGGAAAAATTTTTCGGGTCAT
127 GCATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAA-TTTTCGGGTCAT
* * *
32849 TTTTTTGCAAAA-TTTGGCCGAAATCGTGTACTAACCATCACGG-TTTTTGACTAAAAAGGCGTT
191 TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTG-CTAAAAAAGCATT
** * * * * * *
32912 TTGGGG-CCTTTGAACAGTTTTGCATGATTTTTGGAGTCGATACTCCTTGAAATGTCTATATTTA
255 TTGGGGCCCCGT-CACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCA
*
32976 TCTAATAAAATCTTAGCCACATTGCATTTAAGGATTT-TTTTTACAAGCATCTGAATCTTGTTTC
319 TCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTC
* * *
33040 GATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAATGATATTAAAAGCATGTAAAGTCCTCC
384 GATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCC
* * ** * * * *
33105 AATCTTTTTGG-GGTTAAATTATATAGATTCCATGAGCATTTTATCCAGAAATTAAAGAAAAAAT
449 AATC-TTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAAT
* * * * * * *
33169 TTT-GGGCCGTTTTTTTACAAAATTTTAGCCGAAAGCGTGTACAAAACATCACGGTTTTTGGCTA
513 TTTCGGGTCATTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTA
* * * *
33233 AAAACAGAGTTTCGGGGCCCGTCTCAATTTTGCATGA-TTTTAGCACCGAGACTCCTTGAAATAT
578 AAAA-AGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATAT
* *
33297 TTTTATTCATCTAA-TAAACTCT
642 CTATATTCATCTAATTAAA-TCT
* * * * *
33319 TAGCCACATTACATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTACAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * *
33384 ATTAATTCAGAAAAAATATGAAAAACGATATTAAAAACGTGAAAAGTCCTCTAAT-TTTTGTGGT
66 ATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTT-TGGC
* * * * * * * * ** * **
33448 GTTAAATTATATACATTTTATGAGCATTTTATCCAAAAATTAAGGGAAAAATTTTTTGGACCGTT
129 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGA-GGAAAAATTTTCGGGTCATTT
* * * ** * * ** *
33513 TTTTGCAGAATTTTAGCCGAAAGT-GTATACAAAATATCACGGTTTTTGGTTAAAAAAGTGTTTC
193 TTTTGCAAAATTTTAGCCGAAA-TCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTT
* * ** * *
33577 GGGGCCCCGTCCCAATTTTGCATGATTTTTGGCGTCGAGACTCCGTGAAATATC-ATTATTCATC
257 GGGGCCCCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTA-TATTCATC
* * * ** **
33641 CAATAAACTCTTAGCCACATTGCATTTAAGGATTTGTTTTTACCAGCATCAAAATAGTGTTTCGA
321 TAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * *
33706 TTCAATTACAAATTAATTCAGAAAAAAATATGAAAAACGATATTTAAAGCGTGAAAAGTCCTCCA
386 TTTAATTAGAAATTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCA
* * * * * * * *
33771 ACCCTTTGGACGTTGAATTCTAAATATTTTATGAGTAGTTTATCCAAAAATGGAGGAAAAAAATT
450 ATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGG-AAAAAATT
*
33836 TT-GGGAT-ATTTTTTTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGATTTT
514 TTCGGG-TCA-----TTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTT
* * * * * *
33899 GGCCAAAAAAGCGTTACGAGACCCGTCCCAGTTTTTCTTG-TTTTTGGGCACCGAGACTCCTTGA
573 GGCTAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTT-GGCACCGAGACTCCTTGA
* * *
33963 AATATGTATAATCTTCTAATTAAATCT
637 AATATCTATATTCATCTAATTAAATCT
* * * ** *
33990 CACCCACATTGTATTTAAGGCCTTACTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* ** *
34055 ATTAATTCGTAAAAAATATGAAAATTGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTTGCA
66 ATTAATTAG-AAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCA
* *
34120 TTAAATAATATATAATTTATGAGTATTTTATCCCAAAATTGAGTAAAAAAATTTTCGGGTCATTT
130 TTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAG--GAAAAATTTTCGGGTCA-TT
* * ** * *
34185 TTTTTACAAAATTTTAGCCGAGATCGTGTACTAACCATCATAGTTTTTTGCTAAAAAAACGTTTT
192 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTT
** * * * * * *
34250 GGGGCCTTAG-AACAGTTTTGCATGATTTTTGGAGCCTAGACTCCTTGAAATGTCTATATTTAAC
257 GGGGCC-CCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATC
* *
34314 TAATAAAATCTTAGCCACATTGCATTTAAGGATTT-TTTTAACGAGCATCTGAATCTTGTTTCCA
321 TAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * * * *
34378 TTTACTTAGAAATTAATTCTGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAATCCACAAA
386 TTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA
** * **
34443 TCTTTTGGA-CATACAATTATATATATTTTATGAGTATTTTATCCAAAAAATGAGGAAAATTTTT
451 TCTTTTGGATGTTA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTT
* * * * *
34507 TCTGGTCTTTTTTTTTGGCAAAATTTTAGCCAAAATTGTATACTAACCATCACGGCTTTTGGCTA
515 TCGGGTC-ATTTTTTT-GCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTA
* ** *
34572 AAAAAGCGTTTCGAGACCCGTCTCAGTTTTGCATGATTTTTGGTGCCGAGTCTCCTTGAAATATC
578 AAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATC
*
34637 TATAATCATCTAATTAAATCT
643 TATATTCATCTAATTAAATCT
* * * ** * *
34658 CACCCACATTGCATTTAAGGCCTTATTTTTATAAGCATCTGAATCTTGTCTCGATTAAATTAGAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
34723 ATTAATTCGTAAAAAATATGAAAAACGATATTAAAAGCGAGAGAAGTCTTCCAATCTTTTTGGCA
66 ATTAATTAG-AAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCA
*
34788 TTAAATAATATATAATTTACGAGTA-TTTATCCCAAAATTGAGGAAAAAATTTTCAGGTCATTTT
130 TTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGG-AAAAATTTTCGGGTCATTTT
*
34852 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTATGCTAAAAAAGCATTTTGG
194 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTGG
** * * * *
34917 GGCCTTAG-AACAGTTTTGCATGATTTTTGGAGTCGAGACTCCTTGAAATGTCTATATTCATCTA
259 GGCC-CCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATCTA
*
34981 A-GAAATCTTAGCCACATTGCATTTAAGGATTT-TATTTTACGAGCATCTGAATCTTGTTTCGAT
323 ATAAAATCTTAGCCACATTGCATTTAAGGATTTGT-TTTTACGAGCATCTGAATCTTGTTTCGAT
* * *
35044 TTAATTACAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGTGTGAAAATTCCTCCAAT
387 TTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAAT
* *
35109 CTTTTGGACG-TATAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTT
452 CTTTTGGATGTTA-AATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTT
* **
35173 CGGGTCTTTTTTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGACTTTTGGCTA
516 CGGGTC---ATTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTA
* * * *
35238 AAAAAACGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGACGCCGAGTCTCCTTGAAATATC
578 AAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATC
*
35303 TATAATCATCTAATTAAATCT
643 TATATTCATCTAATTAAATCT
* * * *
35324 CACCCACATTGCATTTAAGGCCTTG-TTTTATGAGCATCTTAATCTTGTTTCGATTTAATTAGAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
35388 ATTAATTCGTAAAAAAATATGAAAAATGATATTCAAAGCGAGAAAAGTCCTCCAATCTTTTTGGC
66 ATTAATTAG--AAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGC
**
35453 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTTTGGTCATTTT
129 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTCGGGTCA-TTT
* *
35518 TTTTGCAAAATTTTAGCCGAAATCATGTACTAATCATCACGGTTTTTTGCTACAAAAA-CATTTT
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTA-AAAAAGCATTTT
** * * * *
35582 GGGGCCTTAG-AACAGTTTTGCATGATTTTTGAAGCCGAGACTCTTTGAAATGTCTATATTCATC
257 GGGGCC-CCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATC
* * * *
35646 TAATAAAATTTTAGCCACATTGCTTTTAAGGATTTTTTTTTTACGTGCATCTGAATCTTGTTTCG
321 TAATAAAATCTTAGCCACATTGCATTTAAGGA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCG
*** *** * ****** *** **
35711 ATTTAA-T--AAATTAATTCCTCCAATCTTTTGGGTGTTGA-ATTATATATATTTTATGAATATT
385 ATTTAATTAGAAATTAATT-CAGAAAAAATATGAAAAACGATATTA-A-A-A--GCGTGAA-AAG
** *** * ** * * * ** * *
35772 TTATCCAA-AAATT-GAGGAAAAATT-TTTCGGGTCATTTTTTTGCAAAATTTTAGCC-GAAATC
443 TCCTCCAATCTTTTGGATGTTAAATTATAT---AT-A-TTTTATG-AGTATTTTATCCAAAAAT-
* * * * *
35833 GTCACGGTTTTTTGTTAAAAAAGCGTTTT-GAGGCCTTTGAATAGTTTTGCATGATTTTTGGAGC
501 -TGA--G------G--AAAAAA---TTTTCG-GGTCATT---T--TTTTGCA-AAATTTT--AGC
* * * ** ** * * * * * * *
35897 CGAGAATCCT-T--GAA--ATGTCTATATTCGTCAAATAAAATC--TT--A-G-CCATATTGCA-
543 C-AAAATCGTGTACTAACCATCACGGTTTTTGGCTAA-AAAAGCGTTTCGAGGCCCGT-CT-CAG
* * ** * ** ** * *
35950 TTTTG-ATTATGTTTGG-TTCGTGGTA-T-CTT-AGGTATC-A-CGTGA--TAATGT-CAT-T
604 TTTTGCATGATTTTTGGCACCG-AG-ACTCCTTGAAATATCTATATTCATCTAAT-TAAATCT
* ** * * * * * * *
36002 CA--CACA-T-C-TTTCCAAGGA-ATGTTATTTTTGTGGGA--AGATATATTTTTTTG-TTT-TT
1 CAGCCACATTGCATTT--AAGGACTTGTT-TTTACG-AGCATCTGA-ATCTTGTTTCGATTTAAT
* * * ** ** * * * * ** **
36057 GTGGGAATAAGATT--ACCATGTTTG------G---TT-AACGTGGGAAAA-TTATTAAAT-TTT
61 -TAGAAATTA-ATTAGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTT
** * * * *** * *
36108 AAGAACA-TAAGATAA-AAACAAGGGAAAAAGAGTAATACTT-T-CC-----TG-GGAAAGTGAA
124 TTG-GCATTAA-ATAATATATAA---TTTACGAGT-AT-TTTATCCCAAAATTGAGGAAA---AA
* *** * ** ** * * * * *** *
36163 CTTTCCCATCCTTTTAGATG-GGAATGTCATTCTGGTAAA--GTGGT-GGGA--AT---GGCATT
179 TTTTCGGGTCATTTT-TTTGCAAAATTTTA-GC-CG-AAATCGT-GTACTAACCATCACGG-TTT
**** * * ** ** * * * * *
36219 CCCACTTAAAATAA-AATTCCT----CCAACC-AAACA-TGGT-AAAG-TTATTT-T-CCCTA-T
238 TTTGC-TAAAA-AAGCATT-TTGGGGCC--CCGTCACAGTTTTGCATGATT-TTTGTAGCCGAGA
* * * * *** * * ** *
36272 CTAACTT-ACCACA-CT-T-TCCCA-CTAATTTCCA-C-AAACCAAACATAAC-CTTAAGGATTT
297 CT-CCTTGA-AATATCTATAT-TCATCTAA-TAAAATCTTAGCC--ACATTGCATTTAAGGATTT
* * *
36329 TTTTTTACTAGCAATCTGAATCTTGTTTCGATTTAATTACAAATTAATTCAGAAAAAATATGAAA
356 GTTTTTACGAGC-ATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAA
* *
36394 AACGATATTAAAAGCGTTAAAAGTCCTCCAATCTTTTGGACT-TAAAATTATATATATTTTATGA
420 AACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTGGA-TGTTAAATTATATATATTTTATGA
* * *
36458 GTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCTTTTTTTTTGCAAAATTTTAGCCTAAA
484 GTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTC-ATTTTTTTGCAAAATTTTAGCCAAAA
* * * *
36523 TCGTGTACTAACCATCACGGATTTTGGCTAAAAAAACGTTTCGATGCCCATCTCAGTTTTGCATG
548 TCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATG
* *
36588 ATTTTTCGCACCGAGACTCCTTGAAATATCTATAATCATCTAATTAAATCT
613 ATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATTAAATCT
* * *
36639 CACCCACATTGCATTTAA-GACCTTGTTTTTATGAGCATCTGAATCTTATTTCGATTTAATTAGA
1 CAGCCACATTGCATTTAAGGA-CTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
* * * * *
36703 AATTAATTCGGAAAAATTACGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCATTTGGGC
65 AATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGC
36768 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAAAATTTTCGGGTCATT
129 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGG--AAAAATTTTCGGGTCATT
* * * *
36833 TTTTTGCAAAATTTT-------A----G------CCATCACGTTTTTTTACTAAAAAAACGTTTT
192 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTT
** * * * * *
36881 GGGGCCTTAG-AACTGTTTTGCATGATTTTTGGAGCCGAGACTCCTTGAAATGTCTATATTTATC
257 GGGGCC-CCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATC
* *
36945 TAATAAAATCTTAGCCACATTGCATTTAAGAAATTT-TTTTTCACGAGCATATGAATCTTGTTTC
321 TAATAAAATCTTAGCCACATTGCATTTAAG-GATTTGTTTTT-ACGAGCATCTGAATCTTGTTTC
* * *
37009 GATTTAATTAGAAATTAATTCAGGAAACATATGAAAAACGATATTAAAAGCGTTAAAAGTCCTCC
384 GATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCC
* * * * *
37074 AATCTTTCGGAAGTTGAATTATATATATTTTATGAGGATTTTATCCAATAATTGAGGAAAAAATT
449 AATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATT
* *
37139 TTCGGGTCATTTTTTTTCGGCAAAATTTTAGCCAAAATTGTGTATTAACCATCACGGTTTTTGGC
514 TTCGGGTCA-TTTTTTT--GCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * *
37204 TATAAAAGCGTTTCGAGGCCCGTCTCACTGTTGCATGATTTTTGG-AGCCAAGACTCCTTGAAAT
576 TAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAAAT
* *
37268 GTCTATATTCATCTAATAAAATC-
640 ATCTATATTCATCTAATTAAATCT
*
37291 CTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
1 C-AGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
* * * * * *
37356 TATTATTTCAGAAAAAAAATGAAAAATGATATTAAAAGC-ATGTAAAGTCCTCCAATC-TTTTAG
65 AATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGA-GAAAAGTCCTCCAATCTTTTTGG
* ** * * * * * *
37419 TAGTTAAAT--TATATAGATTTCATAAGCATTTTAT-CTAGAAATTAAAGAATAAAAATTT-GGA
128 CA-TTAAATAATATATA-ATTT-ACGAGTATTTTATCCCA-AAATT-GAGGA-AAAATTTTCGGG
** * * * *
37480 TCATTTTTTTGCAAAATTTTAGCCGAAAGT-GTGTAGAAAACATCACGGTTTTTGGCTAGAAAAT
187 TCATTTTTTTGCAAAATTTTAGCCGAAA-TCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAG
* * * * * * *
37544 CGTTTCGGGGCCTCGTCTCAATTTTGCATGA-TTTT-TAGCATCGAGACACCTTGAAATATCTTT
251 CATTTTGGGGCCCCGTCACAGTTTTGCATGATTTTTGTAGC--CGAGACTCCTTGAAATATCTAT
*
37607 ATTCATCTAATAAACTCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
314 ATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
* *
37672 GTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGTTATTAAAAGCGTGAAATGT
379 GTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGT
* * * * *
37737 CCTCCAACCTTTTGGAAGTTGAATTATAAATATTTTATGAGTACTTTATCCAAAAATTGAGGAAA
444 CCTCCAATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAA
* *
37802 AAATTTTCGGGTCATTTTTTTGCAAAATTTTAGCCAAAATTGTATACTAACCATCACGGTTTTTG
509 AAATTTTCGGGTCATTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTG
* ** *
37867 GCTAAAAAGGCGTTTCGAGGCTTGTCTCAGTTTTGAATGATTTTTGGCACCGAGACTCCTTGAAA
574 GCTAAAAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAA
* *
37932 TATCTATAATCATCTAATTAAGTCT
639 TATCTATATTCATCTAATTAAATCT
* * * *
37957 CACCCAAATTGCATTTAAGGCCTTGTTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
*
38022 ATTAATTTGTAAAAAATATGAAAAAACGATGA-TAAAAGCGAGAAAAGTCCTCCAATCTTTTTGG
66 ATTAATTAG-AAAAAATATG-AAAAACGAT-ATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGG
*
38086 CATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTCTGGTCATTT
128 CATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTCGGGTCATTT
* * *
38151 TTTTGCAAAATTTTAGACGGAATCGTGTAGTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTG
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTG
* * * * *
38216 AGGCACCCAGT-ACAGTTTTGCCTGATTTTTATAGCCGAGACTCCTTGAAATTTCTATATTTATC
258 GGGC-CCC-GTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATC
38280 TAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
321 TAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* *
38345 TTTAATTAGATATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA
386 TTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAA
*** * * * * *
38410 TCTTTTTCTTGTTAAATTATATACACTTTATAAGTATGTTATCCAAAAATTGAGGAAAAATTTTT
451 TCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTT
* ** * * * * *
38475 CAGG-CCGTTTTTTGCAGAATTTTAGCC-AAATACATGTACAAAACATCACTGTTTTTGGCTAAA
516 CGGGTCATTTTTTTGCAAAATTTTAGCCAAAAT-CGTGTACTAACCATCACGGTTTTTGGCTAAA
* * * * * * * *
38538 AAAGCATTTCGGGGCCCCGTCTCAATTTTGCATGATTTTTGGCGCCAACACTTCTTGATATATCT
580 AAAGCGTTTCGAGG-CCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCT
*
38603 TTATTCATCTAA-TAAACTCT
644 ATATTCATCTAATTAAA-TCT
* * * * * * *
38623 TAGCTACATTACATTTAAGGATTTATTTTTACGAGCATCTGAAT-TGTGTTTAGATTTAATCAGA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGA
* * * *
38687 AATTAATTCAGAAAAAAATATGAAAAACGATATTTAAAGCGTGAAATGTCCTCCAA-CCTTTTGG
65 AATTAATT-AG-AAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGG
* * * * * *
38751 -ATGTTGAATTATAAATATTTTATGAGTACTTTAT-CCAGAAATTGAGGAAAAAATTTTCGGGTC
128 CA--TTAAATAATATATAATTTACGAGTATTTTATCCCA-AAATTGAGG-AAAAATTTTCGGGTC
* * * * **
38814 ATTTTTTTTGAAAAATTTTAGCCAAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAAAGTG
189 A-TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCA
* * * * * * *
38879 TTTTGAGG-CCCGTCTCTGTTTTGCATGATTTTTGGCA-CCGAGACTCCTTGAATTATCTCTAAT
253 TTTTGGGGCCCCGTCACAGTTTTGCATGATTTTT-GTAGCCGAGACTCCTTGAAATATCTATATT
* * ** * ** *
38942 CATCTAATTAAATCTCAATCACTTTGCATTTAAGGCCTTGTTTTTATGAGCATCTGAATCTTGTT
317 CATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
* * * * * *
39007 TCGATTTAATTATAAACTAATTCATATAAAATATGAAAAACGATATTAAAAACGAGAAAAGTCCT
382 TCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
* * * **
39072 CCAATCTTTTTGGCA--TTAAATAATATATATTTTACGAGTATTTTATCCCAAAATTGACAAAAA
447 CCAATC-TTTTGG-ATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTG--AGGAA
* * * *
39135 AAAAATTTCGGGTCA-TTTTTTACAAAATTTTAGCCGAAATCGT-TGACTAACCATCATGGTTTT
508 AAAATTTTCGGGTCATTTTTTTGCAAAATTTTAGCCAAAATCGTGT-ACTAACCATCACGGTTTT
* * * * * * **
39198 TTGCTAAAAAAAGCGTTTTGGGGACCCAGT-ACAGTTTTGCCTCATTTTT-ATAGCCGAGACTCC
572 TGGCT-AAAAAAGCGTTTCGAGG-CCC-GTCTCAGTTTTGCATGATTTTTGGCA-CCGAGACTCC
*
39261 TTGAAATGTCTATATTCATCT-ATTAAAATCT
633 TTGAAATATCTATATTCATCTAATT-AAATCT
* * *
39292 TAGCCACATTGCATTTAAGGAGTTGCTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA-AA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * ***
39356 TATTAATTCAGAAAAAATATGAAAAACGATATTAAAATCGTGAAAAGTCCTCCAATATTTTTCTT
66 -ATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGC
* * * * ** * * ** **
39421 GTTAAATTATATACATTTTATAAATATTTTATCCAAAAATTGAGGAAAAAGTTTTCAAG-CCGTT
129 ATTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAA-TTTTCGGGTCATTT
* * * * * ** *
39485 TTTTGCAAAAGTTTAGCCAAAAACGTGTACAAAACATCACATTTTTTTGCTAAAAAAGCATTTCG
193 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTG
* * * * * *
39550 GGGCCCCGTCTCAATTTTGCATGATTTTTGGCA-CCGAGACTTCTTGATATATCTTTATTCATCT
258 GGGCCCCGTCACAGTTTTGCATGATTTTT-GTAGCCGAGACTCCTTGAAATATCTATATTCATCT
* ** * * *
39614 AATAAACTCTTAGCCGTATTACATTTAAGGATTTGTTTTTACGAGCATCTGAAT-TGTATTTAGA
322 AATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGA
* * * *
39678 TTTAATTAGAAATTAATTCATAAAAAAAAATGAAAAACGATATTTAAAGCGTGAAATGTCCTCCA
386 TTTAATTAGAAATTAATTCA-GAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCA
* * * * *
39743 ACCTTTTGGACGTTGAATTATAAATATTTTATGAGTACTTTATCCAAAAATTGAGGAAAAAATTT
450 ATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTT
*
39808 T-GGGTCATTTTTTTGCAAAATTTTAGCCAAAATCGTGTACGT---TATCACGGTTTTTGGCTAA
515 TCGGGTCATTTTTTTGCAAAATTTTAGCCAAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAA
* * *
39869 AAAAGTGTTTCGATGCCCGTCTCAGTTTTGCATGATTTTTGACACCGAGACTCCTTGAAATATCT
579 AAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCT
*
39934 ATAATT-ATTTAATTAAATCT
644 AT-ATTCATCTAATTAAATCT
* * * *
39954 CACCCACATTGCATTTAAGGTCTTGTTTTTATGAGCATCTGAATCCTGTTTCGATTTAATTAGAA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
40019 ATTAATTCATAAAAAATATGAAAAACGATATTAGAAGCGAGAAAGGTCCTCCAATCTTTTTGGCA
66 ATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCA
* * * **
40084 TTAAATAATATATATTTTACGATTATTTTATCCCAAAATTGAGAAAAGAAAATTCGGGTCATTTT
130 TTAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAA-AATTTTCGGGTCATTTT
* *
40149 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACAACCATCACGGTTTTTCGCTAATAAAGCATTT
194 TTTGCAAAATTTTAGCCGAAATCGTGTACT---AACCATCACGGTTTTTTGCTAAAAAAGCATTT
* * * *
40214 TGGGGACCCAGT-ACAGTTTTGCCTGATTTTTATAGCCGAGACTCCTTGAAATGTCTATATTCAT
256 TGGGG-CCCCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCAT
*
40278 CTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCG
320 CTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCG
* * * *
40343 GTTTAATTAGATATTAATTCAGAAAAATTATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCA
385 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCA
*** * * *
40408 ATCTTTTTCTTGTTAAATTATATACATTTTATAAGTATTTTATCCAAAAATTGAGGAAAAATTTT
450 ATCTTTTGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTT
* * ** * * * * *
40473 TC-AGCCCGTTTTTTGCAGAACTTTAGCCGAAAA-CGTGTACAAAACATCACGGTTTTTTGCTAA
515 TCGGGTCATTTTTTTGCAAAATTTTAGCC-AAAATCGTGTACTAACCATCACGGTTTTTGGCTAA
* * * * * * * * * * *
40536 AAAGGCATTTCGGGGTCCGTCTTAATTTTACATGATTTTTTGCGCCGAGACTTCTTGATATATCT
579 AAAAGCGTTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCT
*
40601 TTATTCATCTAA-TAAACTCT
644 ATATTCATCTAATTAAA-TCT
* * * * * ** * * *
40621 TAGACACATTACATTTAAGGATTTATTTTTACGATTATTTGAAT-TGTGTTTAGATTTTATTAGA
1 CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGA
40685 AATTAATTCAGAAAAAATATGAA
65 AATTAATT-AGAAAAAATATGAA
40708 TTCATAAGAC
Statistics
Matches: 6559, Mismatches: 1137, Indels: 711
0.78 0.14 0.08
Matches are distributed among these distances:
620 5 0.00
621 5 0.00
623 7 0.00
624 12 0.00
625 9 0.00
626 3 0.00
628 10 0.00
629 12 0.00
630 14 0.00
631 10 0.00
632 5 0.00
633 2 0.00
634 2 0.00
635 1 0.00
636 6 0.00
637 3 0.00
639 9 0.00
640 19 0.00
641 23 0.00
642 20 0.00
643 18 0.00
644 6 0.00
645 12 0.00
646 10 0.00
647 27 0.00
648 45 0.01
649 18 0.00
650 25 0.00
651 193 0.03
652 60 0.01
653 261 0.04
654 19 0.00
655 16 0.00
656 8 0.00
657 30 0.00
658 7 0.00
659 10 0.00
660 26 0.00
661 19 0.00
662 316 0.05
663 301 0.05
664 186 0.03
665 915 0.14
666 1395 0.21
667 676 0.10
668 751 0.11
669 279 0.04
670 53 0.01
671 319 0.05
672 74 0.01
673 135 0.02
674 16 0.00
675 25 0.00
676 22 0.00
677 2 0.00
678 4 0.00
679 6 0.00
680 1 0.00
681 2 0.00
682 1 0.00
683 5 0.00
684 6 0.00
685 13 0.00
686 15 0.00
687 3 0.00
688 1 0.00
689 10 0.00
690 10 0.00
691 12 0.00
692 7 0.00
694 5 0.00
695 6 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (663 bp):
CAGCCACATTGCATTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
ATTAATTAGAAAAAATATGAAAAACGATATTAAAAGCGAGAAAAGTCCTCCAATCTTTTTGGCAT
TAAATAATATATAATTTACGAGTATTTTATCCCAAAATTGAGGAAAAATTTTCGGGTCATTTTTT
TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAAAAAAGCATTTTGGGG
CCCCGTCACAGTTTTGCATGATTTTTGTAGCCGAGACTCCTTGAAATATCTATATTCATCTAATA
AAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA
TTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTT
TGGATGTTAAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGT
CATTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAAGCG
TTTCGAGGCCCGTCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCA
TCTAATTAAATCT
Found at i:50224 original size:59 final size:59
Alignment explanation
Indices: 50132--50250 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
50122 GGTTGAGCTT
50132 TGATTTACAAGAAACTTGAACATCTTGCTCTGTTCAATGTCTGTTTAATTTTCTTATTA
1 TGATTTACAAGAAACTTGAACATCTTGCTCTGTTCAATGTCTGTTTAATTTTCTTATTA
*
50191 TGATTTACAAGAAACTTGAACATCTTGCTCTGTTCATTGTCTGTTTAATTTTCTTATTA
1 TGATTTACAAGAAACTTGAACATCTTGCTCTGTTCAATGTCTGTTTAATTTTCTTATTA
50250 T
1 T
50251 CTATTTTGAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (59 bp):
TGATTTACAAGAAACTTGAACATCTTGCTCTGTTCAATGTCTGTTTAATTTTCTTATTA
Found at i:55373 original size:24 final size:24
Alignment explanation
Indices: 55340--55388 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
55330 ACCATCTATC
55340 AATATCAAGTTATCAACATTTGCT
1 AATATCAAGTTATCAACATTTGCT
*
55364 AATATTAAGTTATCAACATTTGCT
1 AATATCAAGTTATCAACATTTGCT
55388 A
1 A
55389 GGTTGTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (24 bp):
AATATCAAGTTATCAACATTTGCT
Found at i:71799 original size:16 final size:16
Alignment explanation
Indices: 71778--71808 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71768 TTTTCCAGAT
71778 AGAGAGAGAAAGAAAG
1 AGAGAGAGAAAGAAAG
*
71794 AGAGAGAGGAAGAAA
1 AGAGAGAGAAAGAAA
71809 CCCAAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (16 bp):
AGAGAGAGAAAGAAAG
Found at i:80796 original size:19 final size:19
Alignment explanation
Indices: 80772--80829 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
80762 CTGTTTAGCA
80772 ACTGTACAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
* *
80791 ACTGTACAGATTAGATTAGAT
1 ACTGTACAGATGAGATT--AC
*
80812 ACTGTACAAATGAGATTA
1 ACTGTACAGATGAGATTA
80830 TTAGAGAAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 17 0.52
21 16 0.48
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:81128 original size:13 final size:14
Alignment explanation
Indices: 81110--81138 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81100 TGTCAATATT
81110 ATTTTAATTA-AAA
1 ATTTTAATTATAAA
81123 ATTTTAATTATAAA
1 ATTTTAATTATAAA
81137 AT
1 AT
81139 AAAAAATTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTAATTATAAA
Found at i:87824 original size:13 final size:13
Alignment explanation
Indices: 87792--87824 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
87782 CCATCCACCA
87792 TTTCTCTTTTTTC
1 TTTCTCTTTTTTC
*
87805 TTT-TCTTTTTTT
1 TTTCTCTTTTTTC
87817 TTTCTCTT
1 TTTCTCTT
87825 CTGTGTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTCTCTTTTTTC
Found at i:89628 original size:3 final size:3
Alignment explanation
Indices: 89620--89648 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
89610 TTCATGATTT
89620 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
89649 GCCTTCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:90751 original size:6 final size:6
Alignment explanation
Indices: 90740--90770 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
90730 CCACATTAAC
90740 ACCATT ACCATT ACCATT ACCATT ACCATT A
1 ACCATT ACCATT ACCATT ACCATT ACCATT A
90771 GCTGATCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
ACCATT
Found at i:95300 original size:5 final size:6
Alignment explanation
Indices: 95282--95307 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
95272 AGTTTCCTTA
95282 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
95308 TTGGGCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:120198 original size:75 final size:75
Alignment explanation
Indices: 120068--120219 Score: 259
Period size: 75 Copynumber: 2.0 Consensus size: 75
120058 GGTATAAAGT
* *
120068 TTGGGTAATTATTTGATACATCGGCGGTGTAAATTTTGGACTCCACAAACTGGTTGTGGAGTTGA
1 TTGGGTAATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAACGGGTTGTGGAGTTGA
* *
120133 TATATGTCCA
66 CACATGTCCA
*
120143 TTGGGTAATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGA
1 TTGGGTAATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAACGGGTTGTGGAGTTGA
120208 CACATGTCCA
66 CACATGTCCA
120218 TT
1 TT
120220 TTTTTAATTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (75 bp):
TTGGGTAATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAACGGGTTGTGGAGTTGA
CACATGTCCA
Found at i:134146 original size:20 final size:20
Alignment explanation
Indices: 134121--134162 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
134111 CATGGCCCAG
134121 TTAAGAAATCTGATTCTCCT
1 TTAAGAAATCTGATTCTCCT
134141 TTAAGAAATCTGATTCTCCT
1 TTAAGAAATCTGATTCTCCT
134161 TT
1 TT
134163 TATATATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (20 bp):
TTAAGAAATCTGATTCTCCT
Found at i:134379 original size:4 final size:4
Alignment explanation
Indices: 134358--134427 Score: 62
Period size: 4 Copynumber: 18.8 Consensus size: 4
134348 TCCATCGAAG
* * *
134358 AAGA AAG- AAGA AA-C AAGA AAGA AAG- AAG- AAG- AAGA GAAGA GACA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA -AAGA AAGA
134402 AAGA AAGA AAGA AAGA AAG- AAGA AAG
1 AAGA AAGA AAGA AAGA AAGA AAGA AAG
134428 TATTGAAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
3 17 0.31
4 34 0.62
5 4 0.07
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:134439 original size:34 final size:29
Alignment explanation
Indices: 134362--134441 Score: 60
Period size: 26 Copynumber: 2.7 Consensus size: 29
134352 TCGAAGAAGA
* *
134362 AAGAAGAAACA-AGAAAGAAAG-AAGAAG
1 AAGAAGAAAGAGAAAAAGAAAGAAAGAAG
*
134389 AAGA-G-AAGAGACAAAGAAAGAAAGAAAG
1 AAGAAGAAAGAGAAAAAGAAAGAAAG-AAG
134417 AAAGAAGAAAGTATTGAAAAAGAAA
1 -AAGAAGAAAG-A--GAAAAAGAAA
134442 AATAATTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
25 3 0.07
26 10 0.24
27 7 0.17
28 3 0.07
29 4 0.10
30 1 0.02
31 3 0.07
32 1 0.02
34 9 0.22
ACGTcount: A:0.69, C:0.03, G:0.25, T:0.04
Consensus pattern (29 bp):
AAGAAGAAAGAGAAAAAGAAAGAAAGAAG
Found at i:145736 original size:19 final size:19
Alignment explanation
Indices: 145694--145737 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
145684 TGTCCGCAGG
145694 ATTTTTTTTTTCCGTCTTC
1 ATTTTTTTTTTCCGTCTTC
* * *
145713 CTTTTTTTTTTCCTTTTTC
1 ATTTTTTTTTTCCGTCTTC
145732 ATTTTT
1 ATTTTT
145738 GGCTCAACGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (19 bp):
ATTTTTTTTTTCCGTCTTC
Found at i:158012 original size:13 final size:13
Alignment explanation
Indices: 157994--158036 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
157984 AAATTGGCTT
157994 TTTTTATTTTTTA
1 TTTTTATTTTTTA
*
158007 TTTTTAATTTTTA
1 TTTTTATTTTTTA
* *
158020 TTCTT-TTTTTTC
1 TTTTTATTTTTTA
158032 TTTTT
1 TTTTT
158037 GAGATAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:158770 original size:18 final size:18
Alignment explanation
Indices: 158747--158783 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
158737 AAATGACTAC
158747 ATATTCGTATAAAGAAAG
1 ATATTCGTATAAAGAAAG
158765 ATATTCGTATAAAGAAAG
1 ATATTCGTATAAAGAAAG
158783 A
1 A
158784 AAAACGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.27
Consensus pattern (18 bp):
ATATTCGTATAAAGAAAG
Found at i:159400 original size:26 final size:26
Alignment explanation
Indices: 159370--159421 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
159360 GAAGCCCTGT
* *
159370 GATACAAGGAAAAAACCCAAAGGTGA
1 GATACAAGGAAAAAAACAAAAGGTGA
159396 GATACAAGGAAAAAAACAAAAGGTGA
1 GATACAAGGAAAAAAACAAAAGGTGA
159422 AATATAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.12, G:0.23, T:0.08
Consensus pattern (26 bp):
GATACAAGGAAAAAAACAAAAGGTGA
Found at i:161971 original size:34 final size:35
Alignment explanation
Indices: 161910--161976 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
161900 TAATTCAATG
* * *
161910 TTCTAAATATTATTTATAAATATTATAT-TTGGAA
1 TTCTAAATATTAATAATAAATAATATATATTGGAA
161944 TTCTAAATATATAATAAT-AATAATATATATTGG
1 TTCTAAATAT-TAATAATAAATAATATATATTGG
161977 TTTTCTCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 19 0.68
35 9 0.32
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (35 bp):
TTCTAAATATTAATAATAAATAATATATATTGGAA
Found at i:174584 original size:25 final size:24
Alignment explanation
Indices: 174556--174610 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
174546 TGTTTTAAGT
174556 AATTTTATTGTGCTTATTTCAAGCA
1 AATTTTATT-TGCTTATTTCAAGCA
* * * *
174581 AATTGCTGTTTTCTTTTTTCAAGCA
1 AATT-TTATTTGCTTATTTCAAGCA
174606 AATTT
1 AATTT
174611 CATGTGGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (24 bp):
AATTTTATTTGCTTATTTCAAGCA
Found at i:175399 original size:22 final size:22
Alignment explanation
Indices: 175374--175415 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
175364 ATAACCCTAA
*
175374 TTTCTCATTTCTT-CTTTTTCAC
1 TTTCTC-TCTCTTCCTTTTTCAC
175396 TTTCTCTCTCTTCCTTTTTC
1 TTTCTCTCTCTTCCTTTTTC
175416 TCTCTCGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTCTCTCTCTTCCTTTTTCAC
Found at i:175559 original size:19 final size:15
Alignment explanation
Indices: 175516--175552 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
175506 AAAAAATCCT
175516 CGTTTCTCTCCTCGA
1 CGTTTCTCTCCTCGA
175531 CGTTTCTCTCCTCGA
1 CGTTTCTCTCCTCGA
175546 CGTTTCT
1 CGTTTCT
175553 TTCTCTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.38, G:0.14, T:0.43
Consensus pattern (15 bp):
CGTTTCTCTCCTCGA
Found at i:179753 original size:45 final size:45
Alignment explanation
Indices: 179692--179816 Score: 187
Period size: 45 Copynumber: 2.8 Consensus size: 45
179682 TTGTGCACTC
* * *
179692 GGCAGTCATGGAGCCAAAGCTCTCTTTGATCTCCTTAAAGTATTT
1 GGCAATCATGGAGCCAAAGCTCTCCTTGATCTCCTTAAAGCATTT
*
179737 GGCAATCATGGGGCCAAAGCTCTCCTTGATCTCCTTAAAGCATTT
1 GGCAATCATGGAGCCAAAGCTCTCCTTGATCTCCTTAAAGCATTT
* * *
179782 GGCAATCGTGGAGCCTAAGCTTTCCTTGATCTCCT
1 GGCAATCATGGAGCCAAAGCTCTCCTTGATCTCCT
179817 GCACGTTTTC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (45 bp):
GGCAATCATGGAGCCAAAGCTCTCCTTGATCTCCTTAAAGCATTT
Found at i:180814 original size:62 final size:62
Alignment explanation
Indices: 180737--181682 Score: 1423
Period size: 62 Copynumber: 15.2 Consensus size: 62
180727 TCGTGTCTGT
* * *
180737 CTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGTGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
* * *
180799 CTTCCTATGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
*
180861 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
*
180923 CTTCCTCTGTCTTCCCGTCTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
*
180985 CTTCCTCTGTCTTCCCGTCTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
* * ** * ****
181047 CTTCCTCTGTCTTCTCGTCTACCTTCGTGCCTGTTCCTTCCTCTGTCTTCC--CGTCTTCCTCTT
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTT--GGCCTC-G-CCTCCTGCGGAGGCCTCTT
181110 C
62 C
* *
181111 CTTCCTCTGTCTTCCTGTGTACCTTCATGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
181173 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTT
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGG----------
181238 CCTCTTC
56 CCTCTTC
181245 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
*
181307 CTTCCTCCGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
181369 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGG-C-C-T-
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
*
181427 C-T--TCT-TC-T--CGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
181482 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
* *
181544 CTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
* * * *
181606 CTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCTTGCGGAGGCCTCTTC
1 CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
181668 CTTCCTCTGTCTTCC
1 CTTCCTCTGTCTTCC
181683 TTCCTCTGTC
Statistics
Matches: 822, Mismatches: 35, Indels: 54
0.90 0.04 0.06
Matches are distributed among these distances:
51 39 0.05
52 1 0.00
53 2 0.00
54 3 0.00
55 4 0.00
56 1 0.00
57 1 0.00
58 4 0.00
59 3 0.00
60 6 0.01
61 2 0.00
62 645 0.78
64 44 0.05
65 1 0.00
66 4 0.00
72 62 0.08
ACGTcount: A:0.03, C:0.41, G:0.21, T:0.35
Consensus pattern (62 bp):
CTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTC
Found at i:181097 original size:14 final size:14
Alignment explanation
Indices: 181080--181126 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
181070 TTCGTGCCTG
181080 TTCCTTCCTCTGTC
1 TTCCTTCCTCTGTC
* * *
181094 TTCCCGTCTTC-CTC
1 TT-CCTTCCTCTGTC
181108 TTCCTTCCTCTGTC
1 TTCCTTCCTCTGTC
181122 TTCCT
1 TTCCT
181127 GTGTACCTTC
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 6 0.24
14 13 0.52
15 6 0.24
ACGTcount: A:0.00, C:0.45, G:0.06, T:0.49
Consensus pattern (14 bp):
TTCCTTCCTCTGTC
Found at i:181124 original size:10 final size:10
Alignment explanation
Indices: 181083--181126 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
181073 GTGCCTGTTC
181083 CTTCCTCTGT
1 CTTCCTCTGT
181093 CTTCC-C-GT
1 CTTCCTCTGT
181101 CTTCCTCT-T
1 CTTCCTCTGT
181110 CCTTCCTCTGT
1 -CTTCCTCTGT
181121 CTTCCT
1 CTTCCT
181127 GTGTACCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.23
9 3 0.10
10 19 0.63
11 1 0.03
ACGTcount: A:0.00, C:0.45, G:0.07, T:0.48
Consensus pattern (10 bp):
CTTCCTCTGT
Found at i:181259 original size:10 final size:10
Alignment explanation
Indices: 181228--181252 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
181218 CCTGCGGAGG
181228 CCTCTTCCTT
1 CCTCTTCCTT
181238 CCTCTTCCTT
1 CCTCTTCCTT
181248 CCTCT
1 CCTCT
181253 GTCTTCCCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (10 bp):
CCTCTTCCTT
Found at i:181551 original size:175 final size:175
Alignment explanation
Indices: 181248--181682 Score: 699
Period size: 175 Copynumber: 2.4 Consensus size: 175
181238 CCTCTTCCTT
* *
181248 CCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCT
1 CCTCT-TCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCT
*
181313 CCGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTCTG
65 CTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTCTG
* *
181378 TCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGG
130 TCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGG
181424 CCTCTTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTC
1 CCTCTTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTC
181489 TGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTCTGT
66 TGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTCTGT
181554 CTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGG
131 CTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGG
* *
181599 CCTCTTCCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCTTGCGGAGGCCT
1 CCTCTT-CTT-CTC-G---T---G--TACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCT
181664 CTTCCTTCCTCTGTCTTCC
55 CTTCCTTCCTCTGTCTTCC
181683 TTCCTCTGTC
Statistics
Matches: 241, Mismatches: 7, Indels: 12
0.93 0.03 0.05
Matches are distributed among these distances:
175 171 0.71
176 8 0.03
177 3 0.01
178 1 0.00
181 1 0.00
184 1 0.00
186 56 0.23
ACGTcount: A:0.04, C:0.41, G:0.22, T:0.34
Consensus pattern (175 bp):
CCTCTTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTC
TGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCTTCCTCTGT
CTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGG
Found at i:181613 original size:237 final size:237
Alignment explanation
Indices: 181238--181667 Score: 797
Period size: 237 Copynumber: 1.8 Consensus size: 237
181228 CCTCTTCCTT
181238 CCTCTTCCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCT
1 CCTCTTCCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCT
* *
181303 CTTCCTTCCTCCGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTT
66 CTTCCTTCCTCCGTCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTT
* * *
181368 CCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCTT
131 CCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCTT
181433 CTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGG
196 CTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGG
181475 CCTCTTCCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCT
1 CCTCTTCCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCT
*
181540 CTTCCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTT
66 CTTCCTTCCTCCGTCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTT
*
181605 CCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCTTGCGGAGGCCTCTTC
131 CCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
181668 CTTCCTCTGT
Statistics
Matches: 186, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
237 186 1.00
ACGTcount: A:0.04, C:0.41, G:0.22, T:0.33
Consensus pattern (237 bp):
CCTCTTCCTTCCTCTGTCTTCCCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCT
CTTCCTTCCTCCGTCTTCCCGTCTACCTTAGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTT
CCTTCCTCTGTCTTCCCGTCTACCTTAGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCTT
CTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGG
Found at i:181682 original size:14 final size:14
Alignment explanation
Indices: 181663--181693 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
181653 TGCGGAGGCC
181663 TCTTCCTTCCTCTG
1 TCTTCCTTCCTCTG
181677 TCTTCCTTCCTCTG
1 TCTTCCTTCCTCTG
181691 TCT
1 TCT
181694 GTCGTGTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.42, G:0.06, T:0.52
Consensus pattern (14 bp):
TCTTCCTTCCTCTG
Found at i:185109 original size:323 final size:320
Alignment explanation
Indices: 183630--188388 Score: 4606
Period size: 323 Copynumber: 14.7 Consensus size: 320
183620 TTTTCCATAT
* * * * * *
183630 TTTTTAGCCATAATACTCATAAAAATTATATAA--CTATGCCAAAAAGATTGAATGCCTTTTAAT
1 TTTTTAGCCAAAATACTCAT-AAAA-TATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
** * *
183693 GCTTCTAATATCGTTTTTCCTATTGCTTTTTCTGTATTAATTTCTAACTAAATCGAAACAACATT
64 GCTTCTAATATCGTTTTTCCTATT--TTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
* * * * ** * *
183758 TAGATGCTCGTAAAAACAAATCCTTAAATCCGATTTGTCCAATATTTGGTTAGACGAATATAGAT
127 GAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT
* * * *
183823 ATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACAGAGTC-GAGGCCGCAGAACGCGTTTTT
192 ATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGA-GCCCCGGAACGCGTTTTT
* *** * **
183887 AACCAAAAACCACGATGATTAGTACACGATTTCGGCTAAAATTGACCCGAAAAGTTTTCGCCTCA
256 AGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTC-CCTCA
183952 A
320 A
* * *
183953 TTTTTAGCCAAAATACTCATAAAAATATATAATTCAATGCCAAAATGATTGAAGGGCTTTGCAAG
1 TTTTTAGCCAAAATACTCAT-AAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
* * * * *
184018 CTTCTAAGATCGTTTTCCCTATTTTTTTTTCTAAATTAATTTCTAATTAAATTGAAGCAGGATTG
65 CTTCTAATATCGTTTTTCCTA--TTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTG
* * * *
184083 AGATGTTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGGTTAGATAAATATAGATG
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
* * *
184148 TTTCAAGGAGTCATGGTCTA--AAAAATCATCCAAAACTGAG-CTGAGGCCCCGGAACGCGTTTT
193 TTTCAAGGAGTCTTGG-C-ACCAAAAATCATGCAAAACTGAGCCGGA-GCCCCGGAACGCGTTTT
* * * * *
184210 TAGCCAAAAACTGTAATGGTTATTACACGATTTCGGGCTAAAACTGAACCGAAATTTTTTTTCCT
255 TAGCCAAAAACTGTGATGGTTAGTACACGATTTC-GGCTAAAATTGACCCGAAA-TTTTTTCCCT
184275 CAA
318 CAA
* * * * * *
184278 TTTGT-GACCAAAATACTCATATAAATATATAATTCAAAGCTAAAAAAACTGAAGGGCTTCTCAC
1 TTTTTAG-CCAAAATACTCATA-AAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* * * * *
184342 GCTTCTAATATTGTTTTTCCTA-TTCTTTCTGAATTAATTTCAAATTAAATCGAAACAAGATTCA
64 GCTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGA
* * * **
184406 GATGCTCGTAAAAACAATTCCTTAAATCCCATGTAGCTGAGACATGGTTAGATGAATATAGATAT
129 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * * *
184471 TTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGG-GATCCTGGAACGTGTTTTTAG
194 TTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAG-CCCCGGAACGCGTTTTTAG
* * * * * *
184535 CCAAAAACCGTGATGGTTATTACACGATTTTGGTTGAAATTTTTTAAAAAATGACCAGAAAATTT
258 CCAAAAACTGTGATGGTTAGTACACGA-TTTCG--G-------CT-AAAATTGACCCG-AAATTT
184600 TTT-CCTCAA
311 TTTCCCTCAA
* * * * * * * * *
184609 TTTTTAGCCACAATACTAATAATAATTATATAACTCAACGCAAAAAAGATTAAATGGTTTTTCAT
1 TTTTTAGCCAAAATACTCATAA-AA-TATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* ** *
184674 GCTTCTAATATTGTTTTTCCTATTGTTTTTTCTGTATTAATTTCTAATTAAATCGAAACAATATT
64 GCTTCTAATATCGTTTTTCCTA-T-TTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
* * * *
184739 TAGATGCTCGTAAAAACAAATCGTTAAATCCAATTTGGCTGAGATTTGGTTAGACGAATATAGAT
127 GAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT
* * * *
184804 ATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCCGAATCCCCGGAACGCGTTTTTC
192 ATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAACGCGTTTTTA
* *
184869 GCAAAAAACTGTGACGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCCACTCAA
257 GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCC-CTCAA
* * * *
184934 TTTTTAGGCAAAATACTCATCAAAATAAATAATTAAATGCCACAAAGATTGAAGGGCTTTTCACG
1 TTTTTAGCCAAAATACTCAT-AAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
** * * *
184999 CTTCTAATATCAATTTTCATATCTTTTTTCTAAATTAATTTTTTAA-TAAATCGAAACACGATTG
65 CTTCTAATATCGTTTTTCCTAT-TTTTTTCTAAATTAA-TTTCTAATTAAATCGAAACAAGATTG
* * *
185063 AGATACTCGTAAAAACAAATCCTTAAATCCAATGTGTCTGAGATTTGGTTAGATAAATATAGATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
** * * ** *
185128 TTTCAAGGAGTCTTGGC-CCAAAAAATCATTAAAAACTAAG-CTGAGGCCCAAGAGCGCGTTTTT
193 TTTCAAGGAGTCTTGGCACC-AAAAATCATGCAAAACTGAGCCGGA-GCCCCGGAACGCGTTTTT
* *
185191 AGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCCAAAATTGTTTT-CCTCA
256 AGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATT-TTTTCCCTCA
185255 A
320 A
* * ** * * * *
185256 TTTGTGGCCAAAATACTCATATAAATATATAATTCAACACTAAAAAGACTGAAGGGATTTTCACA
1 TTTTTAGCCAAAATACTCATA-AAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
* * * * * *
185321 CTTCTAATATCGTATTTCCT-TTTTTTT-T-AATCAATTTATAGTTAAATCGAAATAAGATTCAG
65 CTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGAG
** * * * *
185383 ATGCTCGTAAAAACATTTCCTTAAACCCCATGTGGCCGAGACTTGGTTAGATGAATATAGATATT
130 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * * * * *
185448 TCAAGGAGTCTTAGCGCCAAAAATCAAGCAAAACTAAACCGG-GACCCTGGAACGCGTTTTTAGC
195 TCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAG-CCCCGGAACGCGTTTTTAGC
* * *
185512 CAAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAATTGACCCGAAATATTTTCCACTCAA
259 CAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCC-CTCAA
* * * * *
185575 TTTTTAGCCAAAAAACTCATGAAAATAAATATTTCAATGCCAAAAAGATTGAAGGCCTTTTCACA
1 TTTTTAGCCAAAATACTCAT-AAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
** * * *
185640 CTTCTAATATCAATTTTCCTATCTTTTTTCAAAATTAAGTTT-TTATTAAATCGAAACACGATTG
65 CTTCTAATATCGTTTTTCCTAT-TTTTTTCTAAATTAA-TTTCTAATTAAATCGAAACAAGATTG
* * * *
185704 AGATACTCGTAAAAACAAAT-CTTAAATCCAATGTGGCTGAGATTTAGATAGATGAATATACATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
* * * * *
185768 ATTCAAGGATTCTTGGC-CCAAAAAATCAT-CGAAAACTGAG-CTGAGCCCCCAGAGCGCGTTTT
193 TTTCAAGGAGTCTTGGCACC-AAAAATCATGC-AAAACTGAGCCGGAG-CCCCGGAACGCGTTTT
** * *
185830 TAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGGTCCGAAATTTTTTTCATCA
255 TAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCCCTCA
185895 A
320 A
* * * * * *
185896 TTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGGGC-TTTCACA
1 TTTTTAGCCAAAATACTCATA-AAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
* * *
185960 CTTCTAATATCGTTTTTCC---TTTTTT-T-AATCAATTTATAATTAAATCGAAACAAGATTCAG
65 CTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGAG
** * * * *
186020 ATGCTCGTAAAAACATTTCCTTAAACCCCATGTGGCCGAGACTTGGTTAGATGAATATAGATATT
130 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * * * * **
186085 TCAAGGAGTCTTGGCGCCAAAAATCAAGCAAAATTAAACCGG-GACCGTGGAACGCGTTTTTAGC
195 TCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAG-CCCCGGAACGCGTTTTTAGC
* * * ** **
186149 CAAAAACTGTGATGGTTATTACACGGTTTTGATTAAAATTTATAAAAAATGACCAAAAAAATTTT
259 CAAAAACTGTGATGGTTAGTACACGATTTCGGCT-AAA---AT------TGACC--CGAAATTTT
186214 TT--CTCAA
312 TTCCCTCAA
* * * * * * * *
186221 TTTTTAGCCACAATACTCATAAAAATTATATAACTCAACGCAAAAAAGATTTAATGACTTTTCAT
1 TTTTTAGCCAAAATACTCAT-AAAA-TATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* * *** * *
186286 GCTTCTAATATAGTTTTACCTATTGTTTTTTCGGTATTAAATTCTAATTAAATCGAAACAACATT
64 GCTTCTAATATCGTTTTTCCTA-T-TTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
* * * * ** * *
186351 TAGATACTCGTAAAAACAAATCCTTAAATCTAATTTTTCTAAGATTTGGTTAGAAGAATATAGAT
127 GAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT
* ** * *
186416 ATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGATTCGGGGCCTCGGAACGCGTTTTTA
192 ATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAACGCGTTTTTA
** * * * *
186481 GCTTAAAACTGTGACGGTTAGTATACGATTTCGGCTAAAATTGACCAGCAATTTTTTCCCCCTCA
257 GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTT--CCCTCA
186546 A
320 A
* * *
186547 TTTTTAGCCAAAATACTCATAAAAATAAATAATTCAATGCCAAAAAGATTGAATGGTTTTTCACG
1 TTTTTAGCCAAAATACTCAT-AAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACG
* * * *
186612 CTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTGATTTCTAAATAAATCGAAACAGGATTGAT
65 CTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGAG
* *
186677 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGATATATGAATATAGATATT
130 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * *
186742 TCAAGGAGTCTTGGC-CCAAAAAATCATCCAAAACTGAG-CTGAGGCCCTGGAACGCGTTTTTAG
195 TCAAGGAGTCTTGGCACC-AAAAATCATGCAAAACTGAGCCGGA-GCCCCGGAACGCGTTTTTAG
* * *
186805 CCAAACACGGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTT--GTCAA
258 CCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCCCTCAA
* * ** * * *
186866 TTTGTGGTGAAAATACCCATATAAATATATAATTCAATGCTAAAAAGACTGAAGGG-TATTTCAC
1 TTTTTAGCCAAAATACTCATA-AAATATATAATTCAATGCCAAAAAGATTGAAGGGCT-TTTCAC
* *
186930 GCTTCTAATATCGTTTTTCCTA-TTTTTTC-AGAATTAATTTTTAATTAAATCGAAACAAGATTC
64 GCTTCTAATATCGTTTTTCCTATTTTTTTCTA-AATTAATTTCTAATTAAATCGAAACAAGATTG
* * * *
186993 AGATGCTCGTAAAAACAATTCCTTAAATTCC-ATGTGGCTGAGACTTGATTAGATAAATATAGAT
128 AGATGCTCGTAAAAACAAATCCTTAAA-TCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT
* * * * * *
187057 ATTTCAAGGAGTCTTGGCGCCATAAATCATGCAAAATTAAGCCGGGGCACCGGAACGCGTTTTTA
192 ATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAACGCGTTTTTA
* ** * * * *
187122 GCGAAAAACCATGACGGTTAGTATACGATTTCGGCTAAAATTGACCCGGAATTTTTTCCCCTGAA
257 GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTT-CCCTCAA
* * * *
187187 TCTTTAG-CAAAATTACTCATAACAATATATAATTAAATGCCAAAAACATTGGAGGGCTTTTCAC
1 TTTTTAGCCAAAA-TACTCATAA-AATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
** * *
187251 GCTTCTAATATC--AATT--T-TTTTTTTCTAAATTAATTTCTAATTGAATCGAAACAGGATTGA
64 GCTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGA
* * * *
187311 GATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCAGAGATTTGGTTAGATAAATATAGTTAT
129 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * * * *
187376 TTCAAGGAGTATTTGC-CAAAAAAATCATCCAAAATTGA-CC--A------GAACGCGTTTTTAG
194 TTCAAGGAGTCTTGGCAC-CAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAACGCGTTTTTAG
* * * * * *
187431 CCAAAAAAACTGTGATGGTTAGTACCCAAATTCGGCTAAAATTGGCCC-AAAATTCTTCTCCTCA
258 CC--AAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTC-CCTCA
187495 A
320 A
* * * *
187496 TTTGT-GTCCAAAATACTCATATAAATATATAATTAAACGCTAAAAAGATTGAAGGGCTTTTCAC
1 TTTTTAG-CCAAAATACTCATA-AAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* * * * * *
187560 ACCTCTAATATCGTTTTTACTA-TTTTTT-TAATTTAGTTTCTAATTAAATCGAAACAAGATTCA
64 GCTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGA
* * * *
187623 GATGCTCGTAAAAACAATTCCTTAAACCCCATGTGGCTGAGACTTGGTTAGATGAATATAGATAT
129 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * *
187688 TTCAAGGAGTCTTGGCGCCAAAAATCACGCAAAACTGAGCCGG-GACCCTGGAACGC--TTTTAG
194 TTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAG-CCCCGGAACGCGTTTTTAG
* * * * **
187750 CCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTAAAAAAATGACTAGGAAATTTT
258 CCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA---T-------TGAC-CCGAAA--TT
**
187815 TTTTTTCTCAA
310 TTTTCCCTCAA
* * * * * * * * *
187826 GTTTTAGCCACAATACTCATAAAAATTATATAACTCAACGCAAAAAAAAAAAACTGAATGACTTT
1 TTTTTAGCCAAAATACTCAT-AAAA-TATATAATTCAATGC----CAAAAAGATTGAAGGGCTTT
* * * **
187891 TCATGCTTCAAATATCGTTTTTCCTATTGTTTTTTGTGTATTAATTTCTAATTAAATCGGAAACA
60 TCACGCTTCTAATATCGTTTTTCCTA-T-TTTTTTCTAAATTAATTTCTAATTAAATC-GAAACA
* * * * * * * **
187956 ACATTTAGATGCTCGTAAAAACTAATCCTTAATTCTAATTTGGCTGAGATTTGGTTAAAAAAATA
122 AGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA
** * ** *
188021 TAGATATTTCAAAAAGTCTTGGCACCAAAATATCATGCAAAATTGAGCCGGAGCAACGGAACACG
187 TAGATATTTCAAGGAGTCTTGGCACCAAAA-ATCATGCAAAACTGAGCCGGAGCCCCGGAACGCG
* * * * * **
188086 TTTTTAGCCCAAAACTGTAACGATTAGTACTCGATTTCAACTAAAATTGACCCGAAATTTTTTCC
251 TTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCC
188151 ACTCAA
316 -CTCAA
* * * * * *
188157 TTTTTAGCCAAAAAAACTCATTAAAATAAATAATTAAATGCCCAAAAGATTGAAGGGTTTTTCAT
1 TTTTTAGCC-AAAATACTCA-TAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* ** * * * *
188222 GTTTCTAATATCAATTTTCCTATCTTTTTTCAAAATTAATTTTTTATTAAATCGAAACACGATTG
64 GCTTCTAATATCGTTTTTCCTAT-TTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTG
* * * * * *
188287 AAATACTCATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTAGTTAGATGAATATAGATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
* * * *
188352 TTTTAAGGAATCTTGAC-CCAAAAAATCATCCAAAACT
193 TTTCAAGGAGTCTTGGCACC-AAAAATCATGCAAAACT
188389 AAGCTTAGGA
Statistics
Matches: 3631, Mismatches: 641, Indels: 327
0.79 0.14 0.07
Matches are distributed among these distances:
308 17 0.00
309 69 0.02
310 42 0.01
311 2 0.00
312 117 0.03
313 13 0.00
314 41 0.01
315 112 0.03
316 20 0.01
317 163 0.04
318 363 0.10
319 175 0.05
320 39 0.01
321 131 0.04
322 398 0.11
323 450 0.12
324 300 0.08
325 276 0.08
326 89 0.02
327 69 0.02
329 3 0.00
330 32 0.01
331 68 0.02
332 90 0.02
333 11 0.00
334 162 0.04
335 209 0.06
338 6 0.00
339 18 0.00
340 86 0.02
341 25 0.01
342 1 0.00
343 34 0.01
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (320 bp):
TTTTTAGCCAAAATACTCATAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGC
TTCTAATATCGTTTTTCCTATTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
TGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTT
CAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGAGCCCCGGAACGCGTTTTTAGCCA
AAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCCCTCAA
Found at i:185558 original size:641 final size:639
Alignment explanation
Indices: 183482--188665 Score: 4595
Period size: 641 Copynumber: 8.1 Consensus size: 639
183472 GATCTGATAA
* * * * * *
183482 AATATAAATATTTCAAAGAGTCTTGGCGCCGAAAATCATGCAAAATTGAGCTGGGACTCTGGAAC
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCCTGGAAC
** * * * * * * *
183547 GTATTTTTAGCCAAAAACCGTGAAGGTTATTACACAATTTTGGTTAAAATTTTAAAAAAATCACT
66 GCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA--TT-----GA-C-C-
* * * * * *
183612 AGAATAATTTTTCCAT-ATTTTTTAGCCATAATACTCATAAAAATTATATAACT--ATGCCAAAA
121 CGAA-ATTTTTTCCCTCAATTTTTAGCCAAAATACTCAT-AAAA-TATATAATTAAATGCCAAAA
* * * * ** **
183674 AGATTGAATGCCTTTTAATGCTTCTAATATCGTTTTTCCTAT-TGCTTTTTCTGTATTAATTTCT
183 AGATTGAAGGGCTTTTCACGCTTCTAATATCAATTTTCCTATCT--TTTTTCTAAATTAATTTCT
* * * * * * ** *
183738 AACTAAATCGAAACAAC-ATTTAGATGCTCGTAAAAACAAATCCTTAAATCCGATTTGTCCAATA
246 AATTAAATCGAAAC-ACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGA
* *
183802 TTTGGTTAGACGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAAC-AGAG-T
310 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTA-AGCT
* * ** *
183865 CGAGGCCGCAGAACGCGTTTTTAACCAAAAACCACGATGATTAGTACACGATTTCGGCTAAAATT
374 -GAGGCC-CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATT
* ** *
183930 GACCCGAAAAGTTTTCGCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAATGCCA
437 GGCCC-AAAA-TTTTTTCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGCCA
* * * * * *
183995 AAATGATTGAAGGGCTTTGCAAGCTTCTAAGATCGTTTTCCCTATTTTTTTTTCTAAATTAATTT
500 AAAAGATTGAAGGGATTTTCACGCTTCTAATATCGTTTTTCC---TTTTTTTTCTAAATTAATTT
* * * * *
184060 CTAATTAAATTGAAGCAGGATTGAGATGTTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAG
562 CTAATTAAATCGAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
*
184125 ATTTGGTTAGATA
627 ATTTGGTTAGATG
* * ** * * *
184138 AATATAGATGTTTCAAGGAGTCATGGTC-TAAAAAATCATCCAAAACTGAGCTGAGG-CCCCGGA
1 AATATAGATATTTCAAGGAGTCTTGG-CGCCAAAAATCATGCAAAACTGAGCCG-GGACCCTGGA
* * * *
184201 ACGCGTTTTTAGCCAAAAACTGTAATGGTTATTACACGATTTCGGGCTAAAACTGAACCGAAATT
64 ACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTC-GGCTAAAATTGACCCGAAA-T
* * * * *
184266 TTTTTTCCTCAATTTGT-GACCAAAATACTCATATAAATATATAATTCAAA-GCTAAAAAAACTG
127 TTTTTCCCTCAATTTTTAG-CCAAAATACTCATA-AAATATATAATT-AAATGCCAAAAAGATTG
* *** * * *
184329 AAGGGCTTCTCACGCTTCTAATATTGTTTTTCCTA--TTCTTTCTGAATTAATTTCAAATTAAAT
189 AAGGGCTTTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAATTTCTAATTAAAT
* * * * * **
184392 CGAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAATCCCATGTAGCTGAGACATGGTTAG
254 CGAAACACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAG
* * *
184457 ATGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGATCCTG
319 ATGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCTGAGG--CCCG
* * * * *
184521 GAACGTGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTGAAATTTTTTAAAAAA
382 GAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA-TTTCG--G-------CT-AAAAT
* * * * * * *
184586 TGACCAGAAAATTTTTTCCTCAATTTTTAGCCACAATACTAATAATAATTATATAACTCAACGCA
436 TGGCC-CAAAATTTTTTCCTCAATTTTTAGCCAAAATACTCATAA-AAATATATAATTCAACGCC
* * * * * **
184651 AAAAAGATTAAATGGTTTTTCATGCTTCTAATATTGTTTTTCCTATTGTTTTTTCTGTATTAATT
499 AAAAAGATTGAAGGGATTTTCACGCTTCTAATATCGTTTTTCC--TT-TTTTTTCTAAATTAATT
* * * *
184716 TCTAATTAAATCGAAACAATATTTAGATGCTCGTAAAAACAAATCGTTAAATCCAATTTGGCTGA
561 TCTAATTAAATCGAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
*
184781 GATTTGGTTAGACG
626 GATTTGGTTAGATG
* * * *
184795 AATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCC-GAATCCCCGGAA
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGA-CCCTGGAA
* * *
184859 CGCGTTTTTCGCAAAAAACTGTGACGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTT
65 CGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTT
* * *
184924 TTCCACTCAATTTTTAGGCAAAATACTCATCAAAATAAATAATTAAATGCCACAAAGATTGAAGG
130 TTCC-CTCAATTTTTAGCCAAAATACTCAT-AAAATATATAATTAAATGCCAAAAAGATTGAAGG
* *
184989 GCTTTTCACGCTTCTAATATCAATTTTCATATCTTTTTTCTAAATTAATTTTTTAA-TAAATCGA
193 GCTTTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAA-TTTCTAATTAAATCGA
* * *
185053 AACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGTCTGAGATTTGGTTAGATA
257 AACACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
** * *
185118 AATATAGATATTTCAAGGAGTCTTGGC-CCAAAAAATCATTAAAAACTAAGCTGAGGCCCAAGAG
322 AATATAGATATTTCAAGGAGTCTTGGCGCC-AAAAATCATGCAAAACTAAGCTGAGGCCC-GGAA
*
185182 CGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCCAAAATTGT
385 CGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCCAAAATT-T
* * * * * *
185247 TTTCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACACTAAAAAGACTGAAGGG
449 TTTCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGG
* * * * * *
185312 ATTTTCACACTTCTAATATCGTATTTCCTTTTTTTT-T-AATCAATTTATAGTTAAATCGAAATA
514 ATTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCTAAATTAATTTCTAATTAAATCGAAACA
* ** * * * *
185375 AGATTCAGATGCTCGTAAAAACATTTCCTTAAACCCCATGTGGCCGAGACTTGGTTAGATG
579 AGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * *
185436 AATATAGATATTTCAAGGAGTCTTAGCGCCAAAAATCAAGCAAAACTAAACCGGGACCCTGGAAC
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCCTGGAAC
* * *
185501 GCGTTTTTAGCCAAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAATTGACCCGAAATATTT
66 GCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTT
* * * * *
185566 TCCACTCAATTTTTAGCCAAAAAACTCATGAAAATAAATATTTCAATGCCAAAAAGATTGAAGGC
131 TCC-CTCAATTTTTAGCCAAAATACTCAT-AAAATATATAATTAAATGCCAAAAAGATTGAAGGG
* * *
185631 CTTTTCACACTTCTAATATCAATTTTCCTATCTTTTTTCAAAATTAAGTTT-TTATTAAATCGAA
194 CTTTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAA-TTTCTAATTAAATCGAA
* * *
185695 ACACGATTGAGATACTCGTAAAAACAAAT-CTTAAATCCAATGTGGCTGAGATTTAGATAGATGA
258 ACACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGA
* * * * * * *
185759 ATATACATAATTCAAGGATTCTTGGC-CCAAAAAATCAT-CGAAAACTGAGCTGAGCCCCCAGAG
323 ATATAGATATTTCAAGGAGTCTTGGCGCC-AAAAATCATGC-AAAACTAAGCTGAG-GCCCGGAA
* * *
185822 CGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGGTCCGAAATTTT
385 CGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTGG-CCCAAAATTT
* * * * * *
185887 TTTCATCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGGG
449 TTTCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGG
* * * *
185952 -CTTTCACACTTCTAATATCGTTTTTCC--TTTTTT-T-AATCAATTTATAATTAAATCGAAACA
514 ATTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCTAAATTAATTTCTAATTAAATCGAAACA
* ** * * * *
186012 AGATTCAGATGCTCGTAAAAACATTTCCTTAAACCCCATGTGGCCGAGACTTGGTTAGATG
579 AGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * * *
186073 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCAAGCAAAATTAAACCGGGACCGTGGAAC
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCCTGGAAC
* * * **
186138 GCGTTTTTAGCCAAAAACTGTGATGGTTATTACACGGTTTTGATTAAAATTTATAAAAAATGACC
66 GCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCT-AAA---AT------TGACC
** * * * * *
186203 AAAAAAATTTTTT--CTCAATTTTTAGCCACAATACTCATAAAAATTATATAACTCAACGCAAAA
121 --CGAAATTTTTTCCCTCAATTTTTAGCCAAAATACTCAT-AAAA-TATATAATTAAATGCCAAA
* * * * * * *** *
186266 AAGATTTAATGACTTTTCATGCTTCTAATAT-AGTTTTACCTATTGTTTTTTCGGTATTAAATTC
182 AAGATTGAAGGGCTTTTCACGCTTCTAATATCAATTTT-CCTA-TCTTTTTTCTAAATTAATTTC
* * * ** *
186330 TAATTAAATCGAAACAAC-ATTTAGATACTCGTAAAAACAAATCCTTAAATCTAATTTTTCTAAG
245 TAATTAAATCGAAAC-ACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * *
186394 ATTTGGTTAGAAGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGA-TT
309 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCT
* ** * * *
186458 CGGGGCCTCGGAACGCGTTTTTAGCTTAAAACTGTGACGGTTAGTATACGATTTCGGCTAAAATT
374 -GAGGCC-CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATT
* * * *
186523 -GACCAGCAATTTTTTCCCCCTCAATTTTTAGCCAAAATACTCATAAAAATAAATAATTCAATGC
437 GGCCCA-AAATTTTTT---CCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGC
* * *
186587 CAAAAAGATTGAATGGTTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTAAATTGATTT
498 CAAAAAGATTGAAGGGATTTTCACGCTTCTAATATCGTTTTTCCT-TTTTTTTCTAAATTAATTT
* * *
186652 CTAAATAAATCGAAACAGGATTGATATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
562 CTAATTAAATCGAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* *
186717 ATTTGGATATATG
627 ATTTGGTTAGATG
* *
186730 AATATAGATATTTCAAGGAGTCTTGGC-CCAAAAAATCATCCAAAACTGAGCTGAGG-CCCTGGA
1 AATATAGATATTTCAAGGAGTCTTGGCGCC-AAAAATCATGCAAAACTGAGCCG-GGACCCTGGA
* *
186793 ACGCGTTTTTAGCCAAACACGGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTT
64 ACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTT
* * * ** * * * *
186858 TTT--GTCAATTTGTGGTGAAAATACCCATATAAATATATAATTCAATGCTAAAAAGACTGAAGG
129 TTTCCCTCAATTTTTAGCCAAAATACTCATA-AAATATATAATTAAATGCCAAAAAGATTGAAGG
** *
186921 G-TATTTCACGCTTCTAATATCGTTTTTCCTA--TTTTTTC-AGAATTAATTTTTAATTAAATCG
193 GCT-TTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTA-AATTAATTTCTAATTAAATCG
* * * * *
186982 AAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAATTCC-ATGTGGCTGAGACTTGATTAGA
256 AAACACGATTCAGATACTCGTAAAAACAAATCCTTAAA-TCCAATGTGGCTGAGATTTGGTTAGA
* * * * *
187046 TAAATATAGATATTTCAAGGAGTCTTGGCGCCATAAATCATGCAAAATTAAGCCGGGGCACCGGA
320 TGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCTGAGGC-CCGGA
* * * * * **
187111 ACGCGTTTTTAGCGAAAAACCATGACGGTTAGTATACGATTTCGGCTAAAATTGACCCGGAATTT
384 ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCCAAAATTT
* * * * * * *
187176 TTTCCCCTGAATCTTTAG-CAAAATTACTCATAACAATATATAATTAAATGCCAAAAACATTGGA
449 TTT--CCTCAATTTTTAGCCAAAA-TACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAA
* ** *
187240 GGGCTTTTCACGCTTCTAATATC--AATT--TTTTTTTTCTAAATTAATTTCTAATTGAATCGAA
511 GGGATTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCTAAATTAATTTCTAATTAAATCGAA
* * * *
187301 ACAGGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCAGAGATTTGGTTAGATA
576 ACAAGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * * * *
187365 AATATAGTTATTTCAAGGAGTATTTGC-CAAAAAAATCATCCAAAATTGA-CC---A-----GAA
1 AATATAGATATTTCAAGGAGTCTTGGCGC-CAAAAATCATGCAAAACTGAGCCGGGACCCTGGAA
* * * * *
187420 CGCGTTTTTAGCCAAAAAAACTGTGATGGTTAGTACCCAAATTCGGCTAAAATTGGCCC-AAAAT
65 CGCGTTTTTAGCC--AAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATT
* * * *
187484 TCTTCTCCTCAATTTGT-GTCCAAAATACTCATATAAATATATAATTAAACGCTAAAAAGATTGA
128 TTTTC-CCTCAATTTTTAG-CCAAAATACTCATA-AAATATATAATTAAATGCCAAAAAGATTGA
* * ** * * *
187548 AGGGCTTTTCACACCTCTAATATCGTTTTTACTA--TTTTTT-TAATTTAGTTTCTAATTAAATC
190 AGGGCTTTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAATTTCTAATTAAATC
* * * * * *
187610 GAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATGTGGCTGAGACTTGGTTAGA
255 GAAACACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
* * *
187675 TGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCACGCAAAACTGAGCCG-GGACCCTGG
320 TGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCTGAGG-CCC-GG
* * * *
187739 AACGC--TTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTAAAAAAATG
383 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA--TT-------GG
* * * * * *
187802 ACTAGGAAATTTTTTTTTTCTCAAGTTTTAGCCACAATACTCATAAAAATTATATAACTCAACGC
439 CCCA--AAA---TTTTTTCCTCAATTTTTAGCCAAAATACTCATAAAAA-TATATAATTCAACGC
* * * * * * * **
187867 AAAAAAAAAAAACTGAA-TGACTTTTCATGCTTCAAATATCGTTTTTCCTATTGTTTTTTGTGTA
498 ----CAAAAAGATTGAAGGGA-TTTTCACGCTTCTAATATCGTTTTTCC--TT-TTTTTTCTAAA
* * * * * *
187931 TTAATTTCTAATTAAATCGGAAACAACATTTAGATGCTCGTAAAAACTAATCCTTAATTCTAATT
555 TTAATTTCTAATTAAATC-GAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATG
* **
187996 TGGCTGAGATTTGGTTAAAAA
619 TGGCTGAGATTTGGTTAGATG
** * * *
188017 AATATAGATATTTCAAAAAGTCTTGGCACCAAAATATCATGCAAAATTGAGCC-GGAGCAAC-GG
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAA-ATCATGCAAAACTGAGCCGGGA-C-CCTGG
* * * * * * **
188080 AACACGTTTTTAGCCCAAAACTGTAACGATTAGTACTCGATTTCAACTAAAATTGACCCGAAATT
63 AACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATT
* * *
188145 TTTTCCACTCAATTTTTAGCCAAAAAAACTCATTAAAATAAATAATTAAATGCCCAAAAGATTGA
128 TTTTCC-CTCAATTTTTAGCC-AAAATACTCA-TAAAATATATAATTAAATGCCAAAAAGATTGA
* * * * * *
188210 AGGGTTTTTCATGTTTCTAATATCAATTTTCCTATCTTTTTTCAAAATTAATTTTTTATTAAATC
190 AGGGCTTTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAATTTCTAATTAAATC
* * * * * *
188275 GAAACACGATTGAAATACTCATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTAGTTAGA
255 GAAACACGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
* * * *
188340 TGAATATAGATATTTTAAGGAATCTTGAC-CCAAAAAATCAT-C-CAA--AA-CT---------A
320 TGAATATAGATATTTCAAGGAGTCTTGGCGCC-AAAAATCATGCAAAACTAAGCTGAGGCCCGGA
* * *
188390 A-GC----TTAG----GAA-C----------GTACACGATTTCGGCTAAAATTGACCCGAAATTT
384 ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCC-AAAATT
* * ** ** * *
188435 TTTTCCTCAATTTGTCGCCAAAATACTCATATTAATATATAATTCAATACTAAAAAGACTGAAGG
448 TTTTCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGG
* * *
188500 GATTTTCACGCTGCTAATATCGTTTTTCCTATTTTTTCTGAATTAATTTCTAATTAAATCGAAAC
513 GATTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCTAAATTAATTTCTAATTAAATCGAAAC
* * * * * * *
188565 AAGATTCAAATGCTCGTAAAATA-AATTCCTTAAATCTC-ATGTGACTGAGACTTGGATAGATT
578 AAGATTGAGATGCTCGTAAAA-ACAAATCCTTAAATC-CAATGTGGCTGAGATTTGGTTAGATG
* *
188627 AATATAAATATTTCAAGGAGTCTTGCCGCCAAAAATCAT
1 AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCAT
188666 ACTTAAGTGA
Statistics
Matches: 3777, Mismatches: 593, Indels: 363
0.80 0.13 0.08
Matches are distributed among these distances:
609 5 0.00
610 79 0.02
611 28 0.01
612 1 0.00
614 35 0.01
615 2 0.00
618 12 0.00
619 30 0.01
622 2 0.00
623 1 0.00
624 1 0.00
626 16 0.00
627 45 0.01
628 44 0.01
629 138 0.04
630 86 0.02
631 1 0.00
632 17 0.00
634 1 0.00
635 131 0.03
636 2 0.00
637 192 0.05
638 7 0.00
639 50 0.01
640 289 0.08
641 528 0.14
642 9 0.00
643 10 0.00
644 73 0.02
645 37 0.01
646 250 0.07
647 123 0.03
648 84 0.02
649 171 0.05
650 9 0.00
651 78 0.02
652 107 0.03
653 17 0.00
654 2 0.00
655 19 0.01
656 212 0.06
657 415 0.11
658 161 0.04
659 7 0.00
660 36 0.01
661 20 0.01
662 77 0.02
663 4 0.00
664 9 0.00
665 104 0.03
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (639 bp):
AATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCCTGGAAC
GCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCCGAAATTTTT
TCCCTCAATTTTTAGCCAAAATACTCATAAAATATATAATTAAATGCCAAAAAGATTGAAGGGCT
TTTCACGCTTCTAATATCAATTTTCCTATCTTTTTTCTAAATTAATTTCTAATTAAATCGAAACA
CGATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA
TAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCTGAGGCCCGGAACGCGTT
TTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTGGCCCAAAATTTTTTCCTC
AATTTTTAGCCAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGATTTTCA
CGCTTCTAATATCGTTTTTCCTTTTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTGA
GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
Found at i:188663 original size:285 final size:288
Alignment explanation
Indices: 188112--188665 Score: 679
Period size: 285 Copynumber: 1.9 Consensus size: 288
188102 GTAACGATTA
* *
188112 GTACTCGATTTCAACTAAAATTGACCCGAAATTTTTTCCACTCAATTTTTAGCCAAAAAAACTCA
1 GTACACGATTTCAACTAAAATTGACCCGAAATTTTTTCCACTCAATTTGTAGCCAAAAAAACTCA
* * * * * * *
188177 TTAAAATAAATAATTAAATGCCCAAAAGATTGAAGGGTTTTTCATGTTTCTAATATCAATTTTCC
66 TTAAAATAAATAATTAAATACCAAAAAGACTGAAGGGATTTTCACGCTGCTAATATCAATTTTCC
* * * *
188242 TATCTTTTTTCAAAATTAATTTTTTATTAAATCGAAACACGATTGAAATACTCATAAAAACAAAT
131 TA-CTTTTTTCAAAATTAATTTCTAATTAAATCGAAACAAGATTCAAATACTCATAAAAACAAAT
* * * * *
188307 CCTTAAATCTAATGTGCCTGAGATTTAGTTAGATGAATATAGATATTTTAAGGAATCTTGACCCA
195 CCTTAAATCTAATGTGACTGAGACTTAGATAGATGAATATAAATATTTCAAGGAATCTTGACCCA
188372 AAAAATCATCCAAAACTAAGCTTAGGAAC
260 AAAAATCATCCAAAACTAAGCTTAGGAAC
** * * *
188401 GTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTTC-CTCAATTTGTCGCC-AAAATACTCA
1 GTACACGATTTCAACTAAAATTGACCCGAAATTTTTTCCACTCAATTTGTAGCCAAAAAAACTCA
* * * * **
188464 -TATTAATATATAATTCAATACTAAAAAGACTGAAGGGATTTTCACGCTGCTAATATCGTTTTTC
66 TTA-AAATAAATAATTAAATACCAAAAAGACTGAAGGGATTTTCACGCTGCTAATATCAATTTTC
** * * *
188528 CTA-TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAATA-AAT
130 CTACTTTTTTCAAAATTAATTTCTAATTAAATCGAAACAAGATTCAAATACTCATAAAA-ACAAA
* * * *
188591 TCCTTAAATCTCATGTGACTGAGACTTGGATAGATTAATATAAATATTTCAAGGAGTCTTG-CCG
194 TCCTTAAATCTAATGTGACTGAGACTTAGATAGATGAATATAAATATTTCAAGGAATCTTGACC-
*
188655 CCAAAAATCAT
258 CAAAAAATCAT
188666 ACTTAAGTGA
Statistics
Matches: 223, Mismatches: 39, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
284 2 0.01
285 111 0.50
286 3 0.01
287 60 0.27
288 12 0.05
289 35 0.16
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (288 bp):
GTACACGATTTCAACTAAAATTGACCCGAAATTTTTTCCACTCAATTTGTAGCCAAAAAAACTCA
TTAAAATAAATAATTAAATACCAAAAAGACTGAAGGGATTTTCACGCTGCTAATATCAATTTTCC
TACTTTTTTCAAAATTAATTTCTAATTAAATCGAAACAAGATTCAAATACTCATAAAAACAAATC
CTTAAATCTAATGTGACTGAGACTTAGATAGATGAATATAAATATTTCAAGGAATCTTGACCCAA
AAAATCATCCAAAACTAAGCTTAGGAAC
Found at i:191859 original size:15 final size:16
Alignment explanation
Indices: 191836--191878 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
191826 ACAACGGACA
*
191836 AAGAGAAAGAAGA-AG
1 AAGAAAAAGAAGATAG
191851 AAGAAAAAGAAGATAG
1 AAGAAAAAGAAGATAG
191867 AGAGAAAAAGAA
1 A-AGAAAAAGAA
191879 AGTACATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.48
16 3 0.12
17 10 0.40
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (16 bp):
AAGAAAAAGAAGATAG
Done.