genome.fa.s19532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019532.1 Corchorus olitorius cultivar O-4 contig19565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142361

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470--559	45	2.0	45	97	0	171	25	8	30	35	1.86
6766--6883	51	2.3	51	100	0	236	12	24	17	44	1.84
9324--10156	173	4.8	172	94	1	1378	36	11	13	38	1.81
10180--10587	223	1.8	222	89	3	642	21	23	11	43	1.85
16886--16910	5	5.0	5	100	0	50	0	20	40	40	1.52
17333--17403	35	2.0	35	97	0	133	21	8	32	38	1.83
28192--28249	31	1.9	30	85	3	80	18	20	13	46	1.83
32014--32066	13	4.1	13	100	0	106	32	22	22	22	1.98
54057--54295	120	2.0	115	93	4	406	33	14	15	35	1.89
60061--60085	12	2.1	12	100	0	50	68	24	8	0	1.16
70860--70926	35	1.9	35	100	0	134	23	13	23	38	1.91
73971--74004	18	1.9	18	88	5	52	52	8	14	23	1.69
86503--86540	7	5.1	7	93	6	58	42	2	0	55	1.14
104089--104122	16	2.1	16	88	0	50	44	17	11	26	1.83
115418--115481	33	2.0	32	82	14	78	60	0	18	20	1.36
128403--128441	19	2.0	19	85	14	53	61	0	38	0	0.96
129326--129364	4	9.8	4	82	0	51	76	0	17	5	0.96
129324--129364	20	2.0	20	90	0	64	78	0	17	4	0.93
130169--130204	5	7.0	5	87	6	54	77	0	22	0	0.76
130170--130204	11	3.3	11	92	4	54	80	0	20	0	0.72
133288--133378	14	6.9	14	67	25	56	54	3	21	19	1.58
133283--133363	7	11.3	7	69	18	51	56	2	22	18	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133295--133439	21	7.0	21	75	14	106	54	4	20	20	1.62
133295--133440	41	3.5	42	87	4	199	54	4	20	19	1.62
133499--133613	25	3.9	27	71	24	74	53	0	18	28	1.45
133514--133584	36	1.9	37	91	8	119	57	0	18	23	1.40
133501--133840	64	5.4	64	84	8	473	52	0	20	26	1.46
133529--133862	62	5.3	62	84	8	462	52	0	20	26	1.47
133499--133862	126	2.9	126	95	0	640	52	0	20	26	1.46
133578--133714	37	4.1	35	73	24	125	53	0	21	25	1.46
133690--133739	25	2.0	26	96	4	93	48	0	20	32	1.50
133903--133995	27	3.6	25	73	20	93	52	0	20	26	1.46
134272--134317	20	2.2	21	84	3	58	56	4	13	26	1.55
135998--136025	13	2.2	13	100	0	56	42	14	7	35	1.73
137318--137349	2	16.5	2	93	6	57	53	0	0	46	1.00
138864--138905	21	2.0	21	95	0	75	19	16	28	35	1.93
140467--140505	18	2.1	19	85	4	53	76	5	5	12	1.11
140814--140854	21	2.0	21	85	9	57	34	9	26	29	1.88

Tables:   1

The End!