Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019539.1 Corchorus olitorius cultivar O-4 contig19572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29345

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1230--1350
22
5.6
21
75
11
93
42
13
7
37
1.72
1229--1329
43
2.3
44
81
8
118
40
13
8
36
1.76
2437--2477
19
2.2
19
95
0
73
29
0
0
70
0.87
2447--2489
19
2.3
19
83
0
50
34
2
0
62
1.08
13989--14018
6
4.8
6
95
4
51
36
13
0
50
1.42
14003--14419
207
2.0
207
99
0
825
41
11
6
41
1.66
14504--14587
30
2.9
29
82
8
100
44
1
3
51
1.26
14544--14587
21
2.1
21
83
8
54
47
2
0
50
1.13
16838--17382
273
2.0
274
97
0
1029
44
10
19
25
1.83
22234--22269
2
18.0
2
100
0
72
50
0
0
50
1.00
23513--23582
30
2.4
30
95
2
124
5
41
5
47
1.51

Tables:   1

The End!