Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019541.1 Corchorus olitorius cultivar O-4 contig19574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12073

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
194--228
18
1.9
18
88
0
52
22
28
28
20
1.98
1475--1504
3
10.3
3
92
7
53
70
0
30
0
0.88
1611--1678
13
5.2
12
72
13
55
79
0
20
0
0.73
1612--1678
6
10.7
6
78
15
73
79
0
20
0
0.74
1684--1723
10
4.2
9
87
9
53
67
0
22
10
1.20
1930--1986
26
2.2
26
81
6
62
33
21
10
35
1.87
2569--2623
13
4.4
13
80
15
62
30
1
7
60
1.35
3478--3505
10
2.8
10
100
0
56
10
39
10
39
1.75
7279--7493
109
2.0
109
97
0
403
43
13
12
30
1.81
8415--8440
5
5.2
5
100
0
52
19
0
0
80
0.71
10055--10195
48
3.0
48
78
11
130
29
17
4
48
1.67
10738--10788
18
2.8
18
87
0
66
31
41
15
11
1.83
12026--12064
15
2.6
15
88
8
53
33
33
25
7
1.84

Tables:   1

The End!