Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019542.1 Corchorus olitorius cultivar O-4 contig19575, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2700
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35


Found at i:2401 original size:48 final size:48

Alignment explanation


    Indices: 2290--2418  Score: 147
    Period size: 49  Copynumber: 2.7  Consensus size: 48

       2280 ACTTTTCACT

                                 **     *    *              *
       2290 GCACTTTTTCA-CAATTTTTACCACAAATTTGAACTTTTATATTTACTT
          1 GCACTTTTT-ATCAATTTTTAAGACAAAATTGATCTTTTATATTTACTC

                      *                                       
       2338 GCACCTTTTTCTCAATTTTTAAGACAAAATTGATCTTTTA-ATTTACATC
          1 GCA-CTTTTTATCAATTTTTAAGACAAAATTGATCTTTTATATTTAC-TC

                                *            
       2387 GCACTTTTTATCAATTTTT-TGACAAAATTGAT
          1 GCACTTTTTATCAATTTTTAAGACAAAATTGAT

       2419 TGGCACGCTC


Statistics
Matches: 70,  Mismatches: 8, Indels: 7
        0.82            0.09        0.08

Matches are distributed among these distances:
  47   12  0.17
  48   24  0.34
  49   34  0.49

ACGTcount: A:0.30, C:0.17, G:0.06, T:0.47


Consensus pattern (48 bp):   
GCACTTTTTATCAATTTTTAAGACAAAATTGATCTTTTATATTTACTC

Done.