Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019543.1 Corchorus olitorius cultivar O-4 contig19576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30821

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
715--769
15
3.7
15
83
11
60
34
29
27
9
1.87
730--824
15
6.3
15
82
4
102
35
26
24
13
1.93
706--812
45
2.4
45
80
10
112
36
26
24
13
1.92
2691--2819
49
2.7
48
80
7
152
26
17
4
51
1.65
4197--4353
85
1.9
85
91
1
262
50
3
10
35
1.54
4967--5006
12
3.3
12
80
13
55
42
20
5
32
1.73
5371--5403
2
16.5
2
93
0
57
51
0
3
45
1.16
11084--11112
14
2.1
14
100
0
58
44
6
0
48
1.29
12621--12671
25
2.0
25
92
0
84
27
21
15
35
1.94
16106--16154
23
2.1
23
88
0
71
32
8
14
44
1.74
29965--30023
16
3.7
16
76
17
68
5
15
42
37
1.69
30166--30212
13
3.8
12
78
13
51
55
4
0
40
1.19
30467--30538
31
2.3
33
75
18
82
61
6
4
27
1.41

Tables:   1

The End!