Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019545.1 Corchorus olitorius cultivar O-4 contig19578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25360

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
329--368
12
3.2
13
86
10
57
52
7
2
37
1.43
329--385
12
4.8
11
75
14
51
47
8
7
36
1.62
333--376
12
3.5
13
84
9
56
43
9
6
40
1.63
4723--4763
19
2.2
19
86
8
57
12
9
17
60
1.57
4755--4817
27
2.4
26
78
2
63
17
9
22
50
1.74
5073--5099
13
2.1
13
100
0
54
37
14
0
48
1.45
5595--5720
53
2.4
53
88
4
184
31
19
11
37
1.88
5595--5748
53
2.9
53
85
4
161
30
20
13
35
1.91
5726--5932
37
5.6
37
78
12
196
27
15
18
38
1.91
5726--5933
73
2.8
72
84
6
224
27
15
18
37
1.91
6720--6804
37
2.3
37
95
0
152
52
8
5
32
1.55
7303--7375
27
2.7
26
85
6
83
39
9
19
31
1.84
9425--9766
176
1.9
178
92
1
580
36
9
4
50
1.54
11909--12328
233
1.8
232
88
2
655
35
17
17
29
1.93
12452--12522
35
2.1
35
97
2
135
47
14
2
35
1.58
15811--15858
23
2.1
23
92
0
78
37
14
16
31
1.89
17766--17795
2
15.0
2
100
0
60
50
0
0
50
1.00
18821--18848
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!