Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019549.1 Corchorus olitorius cultivar O-4 contig19582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51229

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
927--1472
273
2.0
273
97
0
1020
44
11
19
24
1.84
3246--3306
27
2.3
27
82
0
68
34
9
22
32
1.87
9330--9381
24
2.2
23
82
6
59
44
7
9
38
1.66
10454--10508
26
2.3
22
72
21
56
41
5
5
47
1.49
12239--12273
2
17.5
2
100
0
70
51
0
48
0
1.00
13438--13731
153
1.9
153
94
0
516
30
11
14
43
1.81
14565--14603
7
5.4
7
93
6
69
74
0
12
12
1.08
14565--14604
15
2.7
15
96
3
73
75
0
12
12
1.06
22422--22451
13
2.4
13
94
5
53
86
0
0
13
0.57
22488--22527
19
2.1
19
100
0
80
20
37
22
20
1.94
22615--22668
29
1.9
27
88
7
81
29
9
20
40
1.83
27598--27635
18
2.2
18
85
4
51
36
10
0
52
1.36
34227--34260
17
2.0
17
100
0
68
23
23
11
41
1.87
40589--40613
4
6.2
4
100
0
50
24
0
24
52
1.48
43246--43279
3
11.3
3
100
0
68
32
0
0
67
0.91
47697--47804
31
3.5
31
82
2
128
16
25
26
30
1.97
48732--48805
28
2.7
28
85
8
107
13
16
29
40
1.86
48900--48951
25
2.1
25
100
0
104
19
11
19
50
1.77

Tables:   1

The End!