genome.fa.s19551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019551.1 Corchorus olitorius cultivar O-4 contig19584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55744

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10533--10557	13	1.9	13	100	0	50	8	16	8	68	1.38
14370--14416	26	1.9	24	87	12	69	27	27	4	40	1.75
21296--21429	41	3.4	39	79	8	137	24	14	13	47	1.80
21328--21438	37	2.9	37	82	12	143	26	12	13	47	1.78
21326--21453	37	3.4	37	80	5	141	25	10	12	51	1.72
22221--22306	32	2.8	31	87	5	129	52	8	16	23	1.70
24898--24957	15	4.3	14	81	10	61	40	8	13	38	1.75
25599--25631	16	2.1	15	94	5	57	84	0	12	3	0.72
26932--27381	64	7.0	64	91	0	632	35	15	22	25	1.94
27447--27566	50	2.4	50	92	0	204	37	12	26	23	1.90
29064--29093	15	1.9	16	93	6	53	53	10	23	13	1.69
29295--29341	14	3.3	14	82	5	67	29	42	2	25	1.67
29295--29353	29	2.1	28	84	12	77	32	40	3	23	1.71
30459--30581	41	3.1	38	75	9	104	24	14	11	49	1.76
30480--30581	41	2.6	37	80	16	118	25	14	10	49	1.76
30480--30590	37	2.9	37	77	17	118	26	13	12	47	1.78
30478--30605	37	3.4	36	76	9	114	25	11	11	51	1.72
31371--31456	32	2.8	31	87	5	129	52	8	16	23	1.70
33212--33254	21	2.1	20	91	4	68	32	13	25	27	1.94
37011--37041	2	15.5	2	100	0	62	51	0	0	48	1.00
37041--37067	2	13.5	2	100	0	54	51	0	48	0	1.00
44971--45011	19	2.1	20	86	4	57	21	0	7	70	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46152--46179	12	2.3	12	100	0	56	25	35	14	25	1.93
54347--54379	16	2.1	16	94	0	57	27	0	9	63	1.24
54361--54389	13	2.2	13	100	0	58	31	0	6	62	1.22

Tables:   1

The End!