Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019552.1 Corchorus olitorius cultivar O-4 contig19585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5390
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31


Found at i:1830 original size:14 final size:14

Alignment explanation


    Indices: 1811--1841  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1801 CGATCCTGGC

                          
       1811 TGAAATCACGATCA
          1 TGAAATCACGATCA

                          
       1825 TGAAATCACGATCA
          1 TGAAATCACGATCA

               
       1839 TGA
          1 TGA

       1842 TTTCAGCTTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23


Consensus pattern (14 bp):   
TGAAATCACGATCA

Found at i:2044 original size:15 final size:15

Alignment explanation


    Indices: 2026--2060  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2016 CCTTTGAAAC

                           
       2026 CTAAAATGCTGAATA
          1 CTAAAATGCTGAATA

                           
       2041 CTAAAATGCTGAATA
          1 CTAAAATGCTGAATA

                 
       2056 CTAAA
          1 CTAAA

       2061 TAAATGAAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26


Consensus pattern (15 bp):   
CTAAAATGCTGAATA
Done.