genome.fa.s19557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019557.1 Corchorus olitorius cultivar O-4 contig19590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107903

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672--714	22	2.0	22	85	0	59	20	23	30	25	1.99
693--814	50	2.4	50	90	0	181	18	23	22	35	1.96
797--836	21	1.9	21	94	0	71	15	22	37	25	1.93
1745--1795	26	2.0	26	96	0	93	39	3	5	50	1.45
3687--3716	15	2.0	15	93	0	51	46	43	0	10	1.37
4790--4836	23	2.0	23	100	0	94	38	12	8	40	1.74
15769--15846	35	2.3	34	91	6	131	38	10	2	48	1.51
16473--16504	16	2.0	16	100	0	64	50	18	6	25	1.70
17288--17338	11	4.8	11	79	11	54	50	0	1	47	1.12
31187--31294	54	2.0	54	100	0	216	24	14	20	40	1.90
32324--32349	13	2.0	13	100	0	52	15	0	30	53	1.42
32710--32760	19	2.7	18	76	8	57	45	0	1	52	1.12
34682--34782	43	2.3	43	91	0	166	26	19	9	43	1.82
34779--34821	22	2.0	22	95	0	77	32	4	6	55	1.47
40957--41425	233	2.0	233	99	0	929	31	14	16	37	1.89
45433--45459	6	4.5	6	100	0	54	29	0	0	70	0.88
50835--50902	31	2.2	32	83	2	84	22	14	16	47	1.82
53658--53788	60	2.2	60	80	4	140	38	10	22	29	1.87
54844--54879	17	2.1	17	89	0	54	38	19	11	30	1.86
58110--58593	178	2.7	178	81	2	522	38	16	12	31	1.86
59064--59146	41	2.0	40	97	2	157	50	4	9	34	1.56
60381--60407	13	2.1	13	100	0	54	7	18	22	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66562--66591	13	2.3	13	100	0	60	73	0	20	6	1.05
77050--77341	155	1.9	155	84	6	394	47	26	8	17	1.76
82318--82347	2	15.0	2	100	0	60	50	50	0	0	1.00
85385--85852	176	2.6	176	82	6	559	32	14	17	35	1.90
87545--87643	36	2.8	36	85	0	126	27	25	17	30	1.97
87545--87714	36	4.8	36	77	7	105	27	22	18	31	1.97
87585--87774	71	2.7	71	75	2	193	25	22	21	31	1.98
88529--88567	4	9.8	4	94	0	69	48	23	2	25	1.63
88719--88744	2	13.0	2	100	0	52	50	0	0	50	1.00
93451--93505	21	2.7	21	74	2	58	5	27	41	25	1.77
95872--95917	24	1.9	24	86	0	65	30	10	41	17	1.84
96921--97145	115	1.9	116	95	0	407	31	24	13	31	1.94
99131--99162	16	2.0	17	88	11	50	31	6	34	28	1.82
99537--99848	44	7.1	43	80	5	324	30	16	22	30	1.95
99537--99854	88	3.6	88	83	3	381	31	15	22	30	1.95
99543--99848	132	2.3	132	86	0	405	31	16	22	30	1.95
100124--100472	72	4.7	73	81	7	316	20	19	22	38	1.94
100195--100475	72	3.8	74	81	6	322	19	20	22	37	1.94
100122--100473	36	9.5	37	75	8	216	20	19	22	37	1.94
100144--100388	110	2.2	112	82	9	279	18	19	22	39	1.92
101590--101795	68	3.0	68	94	1	340	30	23	21	25	1.99
102231--102260	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102657--103701	435	2.4	432	81	6	1217	31	13	12	42	1.81
107288--107479	68	2.8	69	79	5	187	55	17	8	19	1.67
107289--107437	46	3.3	45	83	4	176	55	18	8	18	1.67
107289--107469	23	8.0	23	77	9	158	53	17	8	20	1.69

Tables:   1

The End!