Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001956.1 Corchorus olitorius cultivar O-4 contig01956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34


Found at i:577 original size:28 final size:28

Alignment explanation


    Indices: 537--598  Score: 90
    Period size: 28  Copynumber: 2.2  Consensus size: 28

        527 ATCAGCACAT

                                  *   *  
        537 AAATAATTTCGTAA-TTTGATGCCAACAA
          1 AAATAATTTCGTAATTTTG-TGACAAAAA

                                        
        565 AAATAATTTCGTAATTTTGTGACAAAAA
          1 AAATAATTTCGTAATTTTGTGACAAAAA

                  
        593 AAATAA
          1 AAATAA

        599 AAGAAATGGA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  28   27  0.87
  29    4  0.13

ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32


Consensus pattern (28 bp):   
AAATAATTTCGTAATTTTGTGACAAAAA
Done.