Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019563.1 Corchorus olitorius cultivar O-4 contig19596, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12577

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1533--1597
32
2.1
29
81
13
69
27
16
30
24
1.97
1655--1686
2
16.0
2
93
0
55
46
0
3
50
1.17
3265--3526
107
2.5
106
93
2
440
40
9
8
40
1.69
3986--4012
2
13.5
2
100
0
54
51
0
0
48
1.00
7091--7325
94
2.5
95
88
6
334
28
19
5
46
1.72
7091--7330
47
5.0
47
83
6
288
28
20
5
46
1.72
7275--7422
76
1.9
76
87
2
217
22
24
4
47
1.70
7365--7772
47
8.1
54
87
4
404
26
21
6
46
1.74
7524--8006
47
10.5
47
79
11
477
29
20
4
45
1.71
7467--8006
94
5.8
94
74
14
510
28
20
4
46
1.71
7707--7847
75
1.9
75
86
5
205
22
21
5
49
1.70
7560--7979
223
1.9
216
91
3
678
29
21
4
44
1.72
8007--8048
22
1.9
22
95
0
75
11
23
2
61
1.42
8008--8055
22
2.2
22
88
0
69
12
27
2
58
1.46
12275--12350
16
4.8
16
79
6
91
40
39
13
6
1.70

Tables:   1

The End!