Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019564.1 Corchorus olitorius cultivar O-4 contig19597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39931

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2950--3015
33
2.0
33
90
0
105
34
21
28
15
1.93
3842--3883
15
2.8
15
89
7
59
47
16
21
14
1.82
4436--4576
70
2.0
70
92
0
237
41
17
4
36
1.69
4523--4622
47
2.1
48
96
1
184
46
18
6
30
1.73
18403--18435
15
2.2
15
94
0
57
33
3
24
39
1.71
20448--20478
16
1.9
16
100
0
62
32
16
6
45
1.72
24807--24876
34
2.1
34
83
2
88
55
10
12
21
1.66
25126--25197
31
2.3
30
77
11
83
23
4
12
59
1.50
29833--29892
26
2.3
26
78
13
70
48
10
1
40
1.47
36597--36780
93
2.0
93
93
1
316
52
2
12
32
1.51
36673--36718
22
2.1
22
88
8
67
65
2
10
21
1.35
36687--36718
8
4.2
8
84
15
50
65
0
12
21
1.25
36816--36877
31
2.0
31
96
0
115
41
6
20
30
1.78
36874--36913
21
1.9
21
89
0
62
30
10
15
45
1.78
36874--36919
21
2.2
21
84
0
56
26
10
15
47
1.78
37052--37397
55
6.3
55
69
13
185
24
11
23
40
1.88
37183--37242
32
1.9
32
89
3
95
21
13
25
40
1.89
37361--37418
21
2.8
21
86
5
73
15
17
25
41
1.89
37403--37473
33
2.1
34
81
5
81
25
8
22
43
1.81
37436--37612
55
3.2
55
82
7
187
25
9
23
41
1.84
37051--37662
220
2.8
221
91
0
956
24
11
22
40
1.87

Tables:   1

The End!