Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019566.1 Corchorus olitorius cultivar O-4 contig19599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49848

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7159--7183
13
1.9
13
100
0
50
48
12
8
32
1.69
27523--27557
2
18.0
2
94
5
63
51
0
0
48
1.00
27613--28307
367
1.9
373
84
4
949
29
15
12
42
1.84
31446--31645
65
3.0
63
74
7
193
38
8
20
33
1.83
31511--31602
22
4.2
22
64
18
57
34
6
25
33
1.82
32073--32114
21
2.0
22
90
4
68
38
14
19
28
1.90
35431--35473
21
2.0
21
86
8
61
51
0
0
48
1.00
38695--39113
22
19.1
22
70
11
182
36
9
17
36
1.82
39193--39265
22
3.3
23
81
7
80
36
9
20
32
1.85
39315--39369
21
2.5
21
82
5
65
45
7
7
40
1.60
39315--39418
22
4.7
22
75
8
77
42
8
13
35
1.75
39507--39920
22
18.9
21
72
11
212
36
8
17
36
1.81
39509--39785
151
1.8
151
79
7
321
37
7
16
37
1.79
40464--40502
2
20.0
2
94
5
71
51
0
0
48
1.00
40612--40855
43
5.8
42
85
6
334
20
11
26
40
1.87
40612--40855
84
2.9
84
95
0
434
20
11
26
40
1.87
45461--45485
8
3.1
8
100
0
50
48
0
28
24
1.52
46752--46781
12
2.4
13
94
5
53
16
6
10
66
1.41

Tables:   1

The End!