Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019571.1 Corchorus olitorius cultivar O-4 contig19604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30386

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4634--4673
15
2.9
15
78
17
50
2
45
0
52
1.14
5500--5539
16
2.3
18
91
8
66
30
5
12
52
1.60
6666--6737
31
2.3
31
81
11
76
33
30
20
15
1.94
11693--11752
28
2.1
28
90
6
95
25
36
16
21
1.94
14979--15003
4
6.2
4
100
0
50
52
24
24
0
1.48
22419--22497
40
2.0
40
82
0
95
35
18
12
32
1.89
23093--23163
28
2.5
28
88
0
106
7
30
19
42
1.78
24444--24536
44
2.2
44
92
5
156
38
21
5
34
1.76
27472--27526
27
2.0
27
93
6
94
70
0
1
27
0.97
29640--29728
3
29.3
3
93
6
153
65
1
1
32
1.08

Tables:   1

The End!