Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019575.1 Corchorus olitorius cultivar O-4 contig19608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25913

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--79
2
36.0
2
94
0
126
1
47
0
51
1.09
464--490
1
27.0
1
100
0
54
100
0
0
0
0.00
2253--2290
17
2.2
17
100
0
76
26
23
18
31
1.97
2432--2463
13
2.4
14
90
10
50
56
6
28
9
1.55
4544--4597
22
2.4
22
90
3
81
40
35
16
7
1.77
7797--7837
14
2.9
14
100
0
82
29
0
19
51
1.47
8439--9010
67
8.6
67
82
5
601
24
20
14
40
1.90
9539--9634
31
3.0
32
80
6
88
38
32
9
19
1.84
13721--13754
17
2.0
17
100
0
68
41
5
11
41
1.66
15048--15088
17
2.4
17
87
0
55
29
12
19
39
1.88
15995--16024
8
3.6
8
91
8
51
0
10
0
90
0.47
15989--16027
14
2.9
13
88
11
53
0
10
0
89
0.48
15995--16025
9
3.6
9
95
4
55
0
9
0
90
0.46
16051--16120
19
3.8
19
71
19
58
37
0
5
57
1.23
16030--16109
11
7.7
11
71
17
55
40
0
3
56
1.17
16063--16209
8
17.9
8
70
20
74
34
0
6
58
1.28
16128--16209
36
2.3
36
83
8
96
34
1
4
59
1.26
17102--17163
33
1.9
32
87
9
90
37
4
25
32
1.77
18551--18816
115
2.3
116
89
3
403
23
9
10
56
1.63
25850--25912
2
31.5
2
100
0
126
50
0
49
0
1.00

Tables:   1

The End!