Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019576.1 Corchorus olitorius cultivar O-4 contig19609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18365

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1516--1591
36
2.1
36
90
0
116
31
19
18
30
1.96
1562--1726
72
2.3
72
83
8
201
40
18
12
28
1.87
4334--4386
28
1.9
28
85
11
74
20
5
11
62
1.49
4814--4864
24
2.1
25
85
3
68
17
7
3
70
1.27
5390--5469
41
2.0
41
97
0
151
41
25
11
22
1.87
5726--5751
12
2.2
12
100
0
52
61
7
23
7
1.49
8629--8667
2
19.5
2
89
0
60
51
5
43
0
1.24
9427--9468
18
2.3
18
83
0
57
33
9
28
28
1.88
10697--10725
2
14.5
2
100
0
58
51
0
48
0
1.00
11485--11525
18
2.3
18
82
0
55
29
9
29
31
1.89
14826--14873
2
24.5
2
87
4
62
54
0
0
45
0.99

Tables:   1

The End!