Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019579.1 Corchorus olitorius cultivar O-4 contig19612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5292
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:1565 original size:8 final size:8

Alignment explanation


    Indices: 1552--1578  Score: 54
    Period size: 8  Copynumber: 3.4  Consensus size: 8

       1542 TCTTAGTGTC

                    
       1552 ATTTTAAT
          1 ATTTTAAT

                    
       1560 ATTTTAAT
          1 ATTTTAAT

                    
       1568 ATTTTAAT
          1 ATTTTAAT

               
       1576 ATT
          1 ATT

       1579 ATGACTTGAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (8 bp):   
ATTTTAAT

Found at i:2230 original size:14 final size:14

Alignment explanation


    Indices: 2211--2237  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       2201 AAAGAAAAGA

                          
       2211 AAATCTGTAAATTG
          1 AAATCTGTAAATTG

                         
       2225 AAATCTGTAAATT
          1 AAATCTGTAAATT

       2238 AATGAACATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.44, C:0.07, G:0.11, T:0.37


Consensus pattern (14 bp):   
AAATCTGTAAATTG

Found at i:3348 original size:2 final size:2

Alignment explanation


    Indices: 3341--3375  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       3331 GCTTAAAACG

                                                                
       3341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3376 GACACACAGA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.