Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019584.1 Corchorus olitorius cultivar O-4 contig19617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1993
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20


Found at i:1466 original size:235 final size:235

Alignment explanation


    Indices: 1055--1763  Score: 1418
    Period size: 235  Copynumber: 3.0  Consensus size: 235

       1045 AATCATATAT

                                                                             
       1055 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG
          1 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG

                                                                             
       1120 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA
         66 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA

                                                                             
       1185 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT
        131 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT

                                                    
       1250 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG
        196 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG

                                                                             
       1290 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG
          1 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG

                                                                             
       1355 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA
         66 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA

                                                                             
       1420 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT
        131 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT

                                                    
       1485 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG
        196 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG

                                                                             
       1525 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG
          1 ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG

                                                                             
       1590 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA
         66 AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA

                                                                             
       1655 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT
        131 ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT

                                                    
       1720 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG
        196 CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG

                
       1760 ATCA
          1 ATCA

       1764 AACCAACCTG


Statistics
Matches: 474,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 235  474  1.00

ACGTcount: A:0.47, C:0.20, G:0.19, T:0.15


Consensus pattern (235 bp):   
ATCATGTTCAATGCACCCAAGAAATAGCCAACCGCAGCAGAGACAGCAATAACTAAACATGCAGG
AAATCTAAGGATCAAAGAGGACAGGCAAAGAAACATAAAGACCCATTGAATAGCAAACAAACAAA
ACACACAGCATAAAGAGAATAATAAATAGAATAGAAAAAGAGAGGGCATGCCTCACCAGCAGAAT
CACTTTTATACTTTTAGAGAGAGGCACAATTCAGCAAAGG
Done.