Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019586.1 Corchorus olitorius cultivar O-4 contig19619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34548

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2312--2371
30
2.0
30
83
6
77
35
18
5
41
1.72
11195--11273
26
3.0
26
81
3
88
37
21
17
22
1.94
11506--11784
50
5.6
50
79
9
325
24
25
11
37
1.90
11490--11799
103
3.1
100
83
8
407
25
25
11
36
1.90
12045--12372
64
5.1
64
89
2
399
27
24
13
34
1.93
12012--12372
129
2.8
127
86
3
465
26
25
13
34
1.93
12362--12597
67
3.5
67
94
0
418
27
21
13
38
1.90
16639--16727
44
2.0
43
85
6
117
41
8
22
26
1.83
17573--17610
15
2.6
14
91
4
58
68
23
7
0
1.16
22097--22137
21
1.9
22
85
5
57
19
24
19
36
1.95
26538--26584
24
2.0
24
82
0
58
25
21
4
48
1.68
26618--26666
24
2.0
24
88
7
73
34
36
2
26
1.68

Tables:   1

The End!