Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019588.1 Corchorus olitorius cultivar O-4 contig19621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49780

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--168
13
4.8
13
83
12
85
42
7
10
39
1.69
105--168
27
2.4
27
86
5
94
42
7
10
39
1.69
420--452
6
5.5
6
100
0
66
81
0
18
0
0.68
1859--2135
37
7.4
36
74
8
234
24
19
13
42
1.87
1828--2136
74
4.2
74
91
0
483
25
19
13
41
1.88
1828--2136
149
2.1
148
90
1
485
25
19
13
41
1.88
1867--2176
149
2.1
149
83
5
387
25
19
12
41
1.87
2233--2384
54
2.8
54
81
5
200
26
15
21
36
1.93
2233--2420
54
3.5
53
77
7
175
27
17
21
33
1.96
2488--2565
33
2.4
33
91
0
120
43
17
6
32
1.75
2704--2787
7
12.0
7
97
0
159
57
27
0
15
1.39
2846--2912
26
2.5
27
90
2
100
40
17
7
34
1.78
4242--4270
10
3.0
10
95
5
51
72
0
0
27
0.85
4861--5309
220
2.0
221
97
0
855
41
13
18
26
1.88
7480--7553
29
2.5
28
82
8
94
20
21
18
39
1.93
7786--8116
43
7.8
43
79
7
372
39
26
11
22
1.88
7786--8116
84
3.9
85
87
4
483
39
26
11
22
1.88
8181--8208
2
14.0
2
100
0
56
50
0
0
50
1.00
9556--9657
29
3.4
29
81
8
107
44
15
22
17
1.87
12164--12190
7
3.9
7
100
0
54
25
0
14
59
1.36
13182--13210
9
3.2
9
100
0
58
55
0
34
10
1.34
16345--16404
23
2.4
26
72
10
63
40
11
1
46
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17357--17661
103
3.0
103
95
1
560
38
6
4
50
1.49
18417--18457
21
1.9
22
85
5
57
9
17
29
43
1.80
18789--18959
84
2.0
85
88
4
258
34
9
1
54
1.43
48169--48222
19
2.6
21
77
19
60
38
3
18
38
1.69

Tables:   1

The End!