Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019590.1 Corchorus olitorius cultivar O-4 contig19623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42765

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5503--5534
16
1.9
17
93
6
57
81
0
9
9
0.88
8788--8828
21
2.0
21
90
9
66
31
14
26
26
1.95
11278--11320
12
3.8
12
78
12
54
69
9
6
13
1.35
16211--16251
2
20.0
2
95
5
73
48
2
0
48
1.14
16467--16584
62
1.9
62
91
3
195
31
11
6
50
1.65
22599--22640
12
3.5
12
79
20
52
28
0
0
71
0.86
23116--23153
19
2.0
19
90
10
60
78
0
18
2
0.86
24479--24710
117
2.0
117
91
1
376
28
17
24
29
1.97
29067--29107
7
5.9
7
91
0
64
14
19
21
43
1.87
29067--29107
14
2.9
14
96
0
73
14
19
21
43
1.87
29161--29332
51
3.3
51
94
1
299
12
10
15
61
1.57
29683--29756
25
3.0
25
95
0
130
35
20
32
12
1.89
32388--32518
49
2.7
48
84
6
167
51
6
13
28
1.65

Tables:   1

The End!