Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019604.1 Corchorus olitorius cultivar O-4 contig19637, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11319
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4218 original size:19 final size:18

Alignment explanation


    Indices: 4185--4220  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       4175 TTGAAATTAT

                    *         
       4185 TCTTCAATGGTCTTCAAA
          1 TCTTCAATAGTCTTCAAA

                              
       4203 TCTTCAAATAGTCTTCAA
          1 TCTTC-AATAGTCTTCAA

       4221 TAAGTCTTAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39


Consensus pattern (18 bp):   
TCTTCAATAGTCTTCAAA

Found at i:4668 original size:21 final size:21

Alignment explanation


    Indices: 4618--4668  Score: 57
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       4608 GACTTGGATT

                             **  
       4618 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATAACC

             *  *          *     
       4639 GATGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATAACC

                     
       4660 GGTGATGGC
          1 GGTGATGGC

       4669 TCGGTGATGG


Statistics
Matches: 23,  Mismatches: 7, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.16, C:0.22, G:0.45, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATAACC
Done.