Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019606.1 Corchorus olitorius cultivar O-4 contig19639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75503

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8159--8207
22
2.2
22
78
7
55
57
10
12
20
1.64
9486--9521
19
1.9
18
88
5
54
33
22
2
41
1.68
14117--14149
17
1.9
17
93
0
57
18
21
21
39
1.93
16270--16355
41
2.1
41
86
0
118
22
16
16
45
1.85
18891--18971
28
2.9
28
96
1
146
45
9
9
34
1.71
22156--22204
21
2.3
21
82
0
62
16
40
22
20
1.91
22782--22827
22
2.1
22
100
0
92
41
17
4
36
1.69
25455--25494
15
2.6
16
88
4
55
15
10
12
62
1.54
29252--29281
15
2.0
15
100
0
60
20
6
33
40
1.78
37357--37425
34
2.0
34
97
0
129
11
21
20
46
1.82
43272--43325
19
2.6
21
77
19
60
38
18
3
38
1.69
44155--44191
18
2.1
18
89
0
56
37
10
5
45
1.62
46481--46524
22
2.0
23
86
8
65
29
11
9
50
1.69
48139--48192
19
2.6
21
77
19
60
38
18
3
38
1.69
50275--50303
13
2.3
13
94
5
51
0
20
0
79
0.74
51577--51610
11
3.0
11
91
4
50
41
0
44
14
1.45
53369--53522
26
5.7
27
83
10
156
36
24
16
22
1.94
63378--63431
19
2.6
21
77
19
60
38
3
18
38
1.69
68270--68299
16
1.9
16
93
6
53
43
3
6
46
1.46
68567--68620
19
2.6
21
77
19
60
38
3
18
38
1.69

Tables:   1

The End!