Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019609.1 Corchorus olitorius cultivar O-4 contig19642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5207
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32


Found at i:4298 original size:12 final size:12

Alignment explanation


    Indices: 4281--4313  Score: 66
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       4271 CTTGCAGGTC

                        
       4281 CTCATGAGGATT
          1 CTCATGAGGATT

                        
       4293 CTCATGAGGATT
          1 CTCATGAGGATT

                     
       4305 CTCATGAGG
          1 CTCATGAGG

       4314 CTCTCCTTGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30


Consensus pattern (12 bp):   
CTCATGAGGATT
Done.