Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019611.1 Corchorus olitorius cultivar O-4 contig19644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57307

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383--422
15
2.6
16
84
8
55
60
12
10
17
1.59
9460--9526
29
2.3
30
81
5
82
40
16
10
32
1.82
9755--9824
29
2.3
30
80
9
81
20
22
10
47
1.79
10290--10357
32
2.1
32
83
0
82
10
13
38
38
1.78
10506--10559
5
10.8
5
74
21
51
57
3
0
38
1.17
10506--10532
13
2.1
13
100
0
54
62
0
0
37
0.95
10795--10841
21
2.3
20
81
3
58
53
8
4
34
1.51
29006--29296
52
5.6
52
90
4
453
38
13
19
28
1.89
29006--29296
106
2.8
102
90
4
449
38
13
19
28
1.89
31598--31642
21
2.1
21
87
0
63
31
31
22
15
1.95
44891--44930
15
2.6
16
88
4
55
62
12
10
15
1.54
45699--45736
18
2.2
18
90
4
60
71
7
13
7
1.31
48265--48313
21
2.3
21
78
0
53
22
22
38
16
1.92
48684--48721
18
2.2
18
90
4
60
71
7
13
7
1.31
50485--50546
26
2.3
28
86
5
92
19
24
19
37
1.94
54037--54085
20
2.5
20
96
0
89
61
8
12
18
1.55
54062--54178
31
3.8
31
96
0
198
64
9
12
13
1.50
54037--54171
18
7.8
18
71
18
85
62
9
13
14
1.53
54150--54213
13
4.9
13
82
3
58
60
7
12
18
1.55

Tables:   1

The End!