Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019613.1 Corchorus olitorius cultivar O-4 contig19646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22


Found at i:1115 original size:21 final size:21

Alignment explanation


    Indices: 1072--1126  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1062 CGCCCATTCA

                 *         **    
       1072 CCGTGACACCACCGGTTAAGC
          1 CCGTGCCACCACCGGCCAAGC

                              *  
       1093 CCGTGCCACCACCGGCCATGC
          1 CCGTGCCACCACCGGCCAAGC

                    *    
       1114 CCGTGCCATCACC
          1 CCGTGCCACCACC

       1127 ATTCCAAGTC


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.18, C:0.47, G:0.22, T:0.13


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCCAAGC
Done.