Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019615.1 Corchorus olitorius cultivar O-4 contig19648, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10861
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27


Found at i:526 original size:15 final size:15

Alignment explanation


    Indices: 497--537  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        487 TACTTTGCTA

                            
        497 TGTTTTCTAGTTTAAT
          1 TGTTTTCT-GTTTAAT

                           
        513 TGTTTTCTGTTTAAT
          1 TGTTTTCTGTTTAAT

              *       
        528 TGCTTTCTGT
          1 TGTTTTCTGT

        538 CAATCTCTGT


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   16  0.67
  16    8  0.33

ACGTcount: A:0.12, C:0.10, G:0.15, T:0.63


Consensus pattern (15 bp):   
TGTTTTCTGTTTAAT
Done.