Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019619.1 Corchorus olitorius cultivar O-4 contig19652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 51564
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:7576 original size:80 final size:82

Alignment explanation


    Indices: 7487--7652  Score: 291
    Period size: 81  Copynumber: 2.0  Consensus size: 82

       7477 TAGTCAATTC

                                                                             
       7487 TTGCCCTTGAGCCCTTTTTTGTAATTATCC-TTTCCTTTCACAGAAATGTTATAATAAATCCTAT
          1 TTGCCCTTGAGCCCTTTTTTGTAATTATCCATTTCCTTTCACAGAAATGTTATAATAAATCCTAT

            *                
       7551 TCC-CTTATCTCTACTT
         66 CCCTCTTATCTCTACTT

                                               *       *                     
       7567 TTGCCCTTGAGCCCTTTTTTGTAATTATCCATTTCTTTTCACATAAATGTTATAATAAATCCTAT
          1 TTGCCCTTGAGCCCTTTTTTGTAATTATCCATTTCCTTTCACAGAAATGTTATAATAAATCCTAT

                             
       7632 CCCTCTTATCTCTACTT
         66 CCCTCTTATCTCTACTT

                
       7649 TTGC
          1 TTGC

       7653 TAATGAATGC


Statistics
Matches: 81,  Mismatches: 3, Indels: 2
        0.94            0.03        0.02

Matches are distributed among these distances:
  80   30  0.37
  81   34  0.42
  82   17  0.21

ACGTcount: A:0.22, C:0.25, G:0.07, T:0.46


Consensus pattern (82 bp):   
TTGCCCTTGAGCCCTTTTTTGTAATTATCCATTTCCTTTCACAGAAATGTTATAATAAATCCTAT
CCCTCTTATCTCTACTT

Found at i:9747 original size:13 final size:13

Alignment explanation


    Indices: 9729--9753  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       9719 ATTTCTGCCA

                         
       9729 ATCGACTCCCATC
          1 ATCGACTCCCATC

                        
       9742 ATCGACTCCCAT
          1 ATCGACTCCCAT

       9754 GGTCTCCTCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.44, G:0.08, T:0.24


Consensus pattern (13 bp):   
ATCGACTCCCATC

Found at i:19438 original size:1 final size:1

Alignment explanation


    Indices: 19432--19456  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

      19422 TCGTTCTGTG

                                     
      19432 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

      19457 CTTAAGCAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.