Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019621.1 Corchorus olitorius cultivar O-4 contig19654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74504

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
624--669
14
3.4
14
81
6
67
43
17
6
32
1.75
2721--2769
3
16.3
3
82
0
62
32
0
4
63
1.13
2721--2760
21
1.9
21
100
0
80
30
0
5
65
1.14
2729--2788
6
10.2
6
85
1
50
46
0
1
51
1.10
6489--6531
15
2.8
15
89
3
68
0
20
2
76
0.89
11563--11706
49
3.0
47
82
8
159
50
6
15
27
1.67
26247--26390
76
1.9
76
81
8
177
17
29
29
23
1.97
34153--34218
21
3.1
21
78
8
71
33
16
10
39
1.83
35848--35924
27
2.9
27
100
0
154
18
18
25
37
1.93
38590--38687
41
2.4
41
86
5
137
26
12
12
48
1.75
43143--43200
29
2.0
29
93
0
98
37
3
24
34
1.72
45269--45303
17
1.9
18
88
11
54
57
2
5
34
1.37
45388--45438
19
2.7
19
85
11
61
62
0
0
37
0.95
45753--45792
15
2.5
15
84
8
53
47
2
0
50
1.14
45825--45853
15
1.9
15
100
0
58
48
3
0
48
1.18
45803--45877
19
4.0
17
71
20
60
45
4
1
49
1.29
61706--61822
41
2.9
41
87
1
155
52
11
14
22
1.73
64088--64119
15
2.1
15
94
0
55
15
18
6
59
1.57
64131--64182
21
2.4
22
72
15
54
19
21
7
51
1.71
64080--64177
35
2.8
35
70
14
94
17
21
8
53
1.69
64376--64493
32
3.6
33
87
3
159
24
15
9
50
1.73
65004--65073
21
3.2
21
62
15
52
52
27
10
10
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64957--65098
44
3.2
44
91
2
203
47
26
14
11
1.79
70193--70225
2
16.5
2
100
0
66
48
0
0
51
1.00
73717--73818
27
3.7
27
89
3
125
19
19
24
36
1.95

Tables:   1

The End!