Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019623.1 Corchorus olitorius cultivar O-4 contig19656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37


Found at i:621 original size:24 final size:25

Alignment explanation


    Indices: 575--625  Score: 68
    Period size: 24  Copynumber: 2.1  Consensus size: 25

        565 ATTGGAGTAT

                        *  *         
        575 TTATTTATCTTGTTTCTTAATTTTA
          1 TTATTTATCTTGCTTATTAATTTTA

                              *      
        600 TTATTT-TCTTGCTTATTTATTTTA
          1 TTATTTATCTTGCTTATTAATTTTA

              
        624 TT
          1 TT

        626 GTTACTCTAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  24   17  0.74
  25    6  0.26

ACGTcount: A:0.18, C:0.08, G:0.04, T:0.71


Consensus pattern (25 bp):   
TTATTTATCTTGCTTATTAATTTTA
Done.