Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019625.1 Corchorus olitorius cultivar O-4 contig19658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37335

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--224
30
7.1
30
91
0
338
19
14
20
46
1.84
315--401
39
2.2
39
85
4
122
21
13
18
45
1.84
343--416
39
1.9
39
83
5
98
24
12
14
48
1.78
746--845
27
3.7
27
85
4
103
20
19
23
38
1.94
13428--13482
25
2.2
25
90
3
83
72
3
21
1
1.09
14688--14755
25
2.7
25
84
6
84
17
20
5
55
1.62
14688--14763
25
3.0
25
79
14
75
15
23
5
55
1.61
14804--14873
7
9.4
7
71
17
52
15
22
4
57
1.56
14835--14866
15
2.1
15
94
0
55
15
18
6
59
1.57
15124--15184
32
1.9
32
89
0
95
27
11
9
50
1.70
15140--15206
32
2.1
32
88
0
98
22
17
8
50
1.74
15673--15857
44
4.2
44
92
1
289
47
25
14
12
1.80
15720--15833
21
5.2
21
61
15
52
50
26
11
11
1.72
15741--15812
23
3.2
23
62
15
60
45
27
11
15
1.80
17619--17645
2
13.5
2
100
0
54
48
0
0
51
1.00
20253--20323
26
2.7
27
84
2
90
42
22
14
21
1.88
24178--24202
11
2.3
11
100
0
50
68
8
16
8
1.38
26103--26132
11
2.7
11
89
0
51
30
10
40
20
1.85
33347--33388
15
2.7
15
92
3
66
64
14
9
11
1.50
36628--36682
21
2.6
21
88
0
74
12
21
49
16
1.79

Tables:   1

The End!