Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019626.1 Corchorus olitorius cultivar O-4 contig19659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38225

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1868--2003
23
5.3
23
69
22
67
35
13
10
40
1.79
1849--1947
51
2.0
51
85
2
137
37
12
8
42
1.72
2416--2457
15
2.7
15
92
3
66
64
14
9
11
1.50
10942--10983
22
1.9
22
90
0
66
16
16
23
42
1.88
18265--18309
7
6.4
7
97
0
72
20
26
0
53
1.46
18399--18440
3
14.0
3
89
0
66
33
61
0
4
1.17
21916--21944
13
2.3
13
94
5
51
31
0
17
51
1.45
29646--29723
33
2.4
33
89
4
113
17
37
32
12
1.88
31218--31257
18
2.2
19
90
4
64
30
0
7
62
1.23
33455--33481
4
6.8
4
100
0
54
51
0
0
48
1.00
33555--33609
10
5.7
10
79
12
53
47
14
1
36
1.55
33663--33772
33
3.4
33
82
3
134
9
39
33
18
1.82
33662--33796
33
4.2
32
85
3
130
8
40
34
17
1.80
36258--36292
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!