Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019628.1 Corchorus olitorius cultivar O-4 contig19661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164684

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2541--2608
33
2.0
35
88
5
104
33
20
27
17
1.95
3616--3666
19
2.7
19
77
14
61
47
0
1
50
1.12
4878--4934
24
2.5
22
81
16
62
71
3
19
5
1.19
10065--10098
16
2.1
16
100
0
68
41
5
0
52
1.25
9307--12788
330
10.4
328
73
10
2281
36
15
13
33
1.88
12944--14057
330
3.3
329
81
7
1255
37
14
14
34
1.86
14456--14485
15
1.9
16
93
6
53
53
3
0
43
1.17
15017--15162
69
2.1
69
98
0
283
38
7
19
34
1.80
19039--19249
87
2.4
87
90
0
341
27
22
19
29
1.98
26582--26744
87
1.9
87
89
0
254
31
26
11
30
1.91
49312--49351
8
5.0
8
100
0
80
0
37
12
50
1.41
70165--70212
23
2.1
23
100
0
96
12
35
31
20
1.90
76166--76245
42
1.9
42
92
0
133
46
15
7
31
1.73
76312--76425
56
2.0
57
91
5
187
41
0
22
35
1.60
78136--78168
16
2.0
17
94
5
59
87
0
12
0
0.53
86804--86845
3
14.0
3
80
9
50
0
4
30
64
1.14
87322--87364
3
13.7
3
80
9
50
2
2
60
34
1.22
102141--102180
20
2.0
20
100
0
80
25
15
15
45
1.84
102438--102465
7
4.0
7
100
0
56
14
0
71
14
1.15
106209--106302
45
2.2
44
88
7
140
37
22
6
34
1.80
108053--108106
23
2.3
24
87
6
76
44
1
14
38
1.56
109689--109767
3
26.3
3
97
0
149
67
0
1
31
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109931--109957
7
3.9
7
100
0
54
25
14
0
59
1.36
110846--110873
2
14.0
2
100
0
56
50
0
0
50
1.00
112414--112446
7
4.9
7
96
3
59
45
0
15
39
1.46
114080--114110
2
15.0
2
93
6
53
48
0
3
48
1.17
116925--116981
2
29.5
2
82
7
73
47
3
1
47
1.29
116925--116981
17
3.3
17
87
2
78
47
3
1
47
1.29
123754--123835
41
2.0
41
92
0
137
26
12
19
41
1.87
123975--124003
2
14.5
2
100
0
58
51
0
0
48
1.00
125498--125530
2
16.5
2
100
0
66
51
0
0
48
1.00
127538--127570
2
16.0
2
93
6
57
48
0
3
48
1.17
128578--128623
16
2.8
17
80
12
60
78
0
15
6
0.95
135067--135096
2
15.0
2
100
0
60
50
0
0
50
1.00
158476--158772
41
8.2
32
80
18
254
30
7
26
34
1.85
158541--158789
41
6.3
41
89
8
399
32
7
27
33
1.84
158507--158772
82
3.5
73
81
17
298
31
7
27
33
1.85
158566--158710
20
7.1
20
66
4
92
31
6
28
33
1.84
159615--160328
238
3.0
234
81
7
776
31
16
12
40
1.85
160480--160628
74
2.0
74
89
0
226
30
20
19
29
1.97
162008--162048
21
2.0
21
90
9
66
56
17
2
24
1.53
162461--162933
50
9.5
50
92
0
748
32
23
36
7
1.83
163288--164676
645
2.2
641
90
3
2168
34
18
15
31
1.92
163288--164684
320
4.3
320
86
4
1875
34
18
15
31
1.92

Tables:   1

The End!