Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019630.1 Corchorus olitorius cultivar O-4 contig19663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90921

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3082--3114
13
2.5
13
86
13
50
27
3
9
60
1.42
4879--4910
12
2.7
12
95
0
55
0
18
31
50
1.48
6486--6541
21
2.8
19
83
5
67
30
21
10
37
1.87
7752--7834
42
2.0
43
90
2
132
22
18
22
36
1.95
7822--7864
20
2.1
21
86
4
61
39
20
18
20
1.93
8324--8354
12
2.6
12
89
0
53
45
29
22
3
1.68
9218--9251
2
17.0
2
100
0
68
50
0
0
50
1.00
13188--13217
14
2.2
13
94
5
51
0
16
0
83
0.65
13926--13952
14
1.9
14
100
0
54
55
14
0
29
1.40
25727--25823
50
1.9
50
93
0
167
36
17
8
38
1.80
30135--30189
28
2.0
27
86
10
76
12
10
27
49
1.74
34874--35095
111
2.0
111
90
0
354
25
15
14
44
1.84
39460--39516
29
2.0
29
85
0
78
26
8
14
50
1.71
55375--55415
21
1.9
22
90
5
66
48
4
17
29
1.67
61146--61175
13
2.3
13
100
0
60
86
0
13
0
0.57
61567--61618
27
2.0
26
88
11
79
40
0
15
44
1.46
65698--66299
305
1.9
302
82
13
744
19
13
19
47
1.82
69252--69381
64
2.0
64
100
0
260
30
9
32
27
1.88
75282--75326
3
15.0
3
92
0
63
33
26
2
37
1.69
81818--81878
31
2.0
31
93
0
104
34
24
14
26
1.94
82943--82975
15
2.1
16
94
5
59
54
36
9
0
1.32
83254--83278
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86191--86221
2
15.5
2
93
0
53
48
0
0
51
1.00
86329--86383
22
2.5
23
82
8
62
34
10
7
47
1.66
86341--86926
22
27.2
21
67
15
227
35
15
9
38
1.81
86411--86451
21
1.9
22
90
5
66
31
12
4
51
1.60
86433--86562
45
2.9
45
82
7
133
36
17
12
33
1.87
86612--87176
44
13.3
43
67
15
229
35
15
9
39
1.80
86964--87179
22
9.8
22
73
10
145
34
13
9
41
1.78

Tables:   1

The End!