Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019632.1 Corchorus olitorius cultivar O-4 contig19665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60750
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:279 original size:32 final size:32
Alignment explanation
Indices: 243--313 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
233 AAATTGATAG
* * *
243 ACAAAATAGCCCTCGAATTTTGACATAGAAGA
1 ACAAAATAACCCTCAAATTTTGACAAAGAAGA
* *
275 ACAAAATAACCCTCAAATTTTGACAAAGTAGG
1 ACAAAATAACCCTCAAATTTTGACAAAGAAGA
307 ACAAAAT
1 ACAAAAT
314 GTTCTTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.21
Consensus pattern (32 bp):
ACAAAATAACCCTCAAATTTTGACAAAGAAGA
Found at i:523 original size:14 final size:14
Alignment explanation
Indices: 504--530 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
494 AAAAAAAAAC
504 ATTGAATTAATATG
1 ATTGAATTAATATG
518 ATTGAATTAATAT
1 ATTGAATTAATAT
531 ATCCATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATTGAATTAATATG
Found at i:11218 original size:21 final size:21
Alignment explanation
Indices: 11194--11252 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
11184 ACAAATTTTC
11194 CATTATATTTAAAACCATTTA
1 CATTATATTTAAAACCATTTA
** *
11215 CATTA-A--CCACA-CATTTA
1 CATTATATTTAAAACCATTTA
*
11232 TATTATATTTAAAACCATTTA
1 CATTATATTTAAAACCATTTA
11253 TATTTTCCAT
Statistics
Matches: 27, Mismatches: 7, Indels: 8
0.64 0.17 0.19
Matches are distributed among these distances:
17 10 0.37
18 3 0.11
20 3 0.11
21 11 0.41
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.41
Consensus pattern (21 bp):
CATTATATTTAAAACCATTTA
Found at i:11241 original size:38 final size:38
Alignment explanation
Indices: 11178--11252 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 38
11168 CGCTCACAGC
11178 TTAACCACAAATTTTCCATTATATTTAAAACCATTTACA
1 TTAACCACAAATTTT-CATTATATTTAAAACCATTTACA
*
11217 TTAACCACACATTTAT-ATTATATTTAAAACCATTTA
1 TTAACCACAAATTT-TCATTATATTTAAAACCATTTA
11253 TATTTTCCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
38 20 0.59
39 13 0.38
40 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.40
Consensus pattern (38 bp):
TTAACCACAAATTTTCATTATATTTAAAACCATTTACA
Found at i:26973 original size:13 final size:13
Alignment explanation
Indices: 26941--26989 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
26931 AAAAATGGGC
*
26941 AGAAAGAGAGAGAA
1 AGAAAGA-AGAGAT
*
26955 AGAAAGAAAAGAT
1 AGAAAGAAGAGAT
*
26968 AGAAAGGAGAGAT
1 AGAAAGAAGAGAT
*
26981 AGATAGAAG
1 AGAAAGAAG
26990 GGAGGGAGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
13 22 0.76
14 7 0.24
ACGTcount: A:0.61, C:0.00, G:0.33, T:0.06
Consensus pattern (13 bp):
AGAAAGAAGAGAT
Found at i:27164 original size:17 final size:18
Alignment explanation
Indices: 27119--27163 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 18
27109 GCCCTTTTTA
27119 TTTTCATTTATATAAACTTT
1 TTTTC-TTT-TATAAACTTT
27139 TTTTCTTTTATAAA-TTT
1 TTTTCTTTTATAAACTTT
27156 TTTT-TTTT
1 TTTTCTTTT
27164 TGGCCCTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.16
17 7 0.28
18 6 0.24
19 3 0.12
20 5 0.20
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTCTTTTATAAACTTT
Found at i:30624 original size:22 final size:22
Alignment explanation
Indices: 30599--30643 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
30589 TGATTTTATC
*
30599 TTATAATAATATGATCCAAATT
1 TTATAATAACATGATCCAAATT
30621 TTATAATAACATGATCCAAATT
1 TTATAATAACATGATCCAAATT
30643 T
1 T
30644 CTTAAGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (22 bp):
TTATAATAACATGATCCAAATT
Found at i:39823 original size:31 final size:33
Alignment explanation
Indices: 39765--39825 Score: 99
Period size: 31 Copynumber: 1.9 Consensus size: 33
39755 TCTATTAATC
39765 CACATCTTTCAATTAAAGCAAACATAAGTTGAT
1 CACATCTTTCAATTAAAGCAAACATAAGTTGAT
*
39798 CACATC-TTCAATT-AAGCAAATATAAGTT
1 CACATCTTTCAATTAAAGCAAACATAAGTT
39826 TTCAATTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 14 0.52
32 7 0.26
33 6 0.22
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (33 bp):
CACATCTTTCAATTAAAGCAAACATAAGTTGAT
Found at i:39829 original size:22 final size:22
Alignment explanation
Indices: 39804--39848 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
39794 TGATCACATC
39804 TTCAATTAAGCAAATATAAGTT
1 TTCAATTAAGCAAATATAAGTT
39826 TTCAATTAAGCAAATATAAGTT
1 TTCAATTAAGCAAATATAAGTT
39848 T
1 T
39849 GGTTTCGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (22 bp):
TTCAATTAAGCAAATATAAGTT
Found at i:40905 original size:33 final size:33
Alignment explanation
Indices: 40833--40911 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
40823 TTTTTTTTCC
40833 TCTTTCTCTCTCCTCTCTCTTTTCTTTCTCTCA
1 TCTTTCTCTCTCCTCTCTCTTTTCTTTCTCTCA
** *
40866 GGTTTCTCTCTCCTCTCTCTTTCTCTTTCTCT-T
1 TCTTTCTCTCTCCTCTCTCTTT-TCTTTCTCTCA
40899 TCTTTCTCTCTCC
1 TCTTTCTCTCTCC
40912 AGAAAGGGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 31 0.77
34 9 0.22
ACGTcount: A:0.01, C:0.39, G:0.03, T:0.57
Consensus pattern (33 bp):
TCTTTCTCTCTCCTCTCTCTTTTCTTTCTCTCA
Found at i:44802 original size:21 final size:21
Alignment explanation
Indices: 44778--44826 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
44768 TTCAAGATTG
44778 TTTCATAAGAAGGATTCATAT
1 TTTCATAAGAAGGATTCATAT
44799 TTTCATAAGAAGGATTCATAT
1 TTTCATAAGAAGGATTCATAT
44820 TTTCATA
1 TTTCATA
44827 GGTTGCAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (21 bp):
TTTCATAAGAAGGATTCATAT
Found at i:45025 original size:60 final size:60
Alignment explanation
Indices: 44932--45048 Score: 234
Period size: 60 Copynumber: 1.9 Consensus size: 60
44922 ATGAGTTTCC
44932 ACTCAGACAAGGCACAGCTGTCAGATTAGCCGGATTGCTGATATTGTTAGAACACCGGAA
1 ACTCAGACAAGGCACAGCTGTCAGATTAGCCGGATTGCTGATATTGTTAGAACACCGGAA
44992 ACTCAGACAAGGCACAGCTGTCAGATTAGCCGGATTGCTGATATTGTTAGAACACCG
1 ACTCAGACAAGGCACAGCTGTCAGATTAGCCGGATTGCTGATATTGTTAGAACACCG
45049 AACAAAATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (60 bp):
ACTCAGACAAGGCACAGCTGTCAGATTAGCCGGATTGCTGATATTGTTAGAACACCGGAA
Found at i:45084 original size:15 final size:15
Alignment explanation
Indices: 45064--45099 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
45054 AATATAGATT
*
45064 ATAATACAAGTGAGA
1 ATAATACAAGTAAGA
*
45079 ATAATACGAGTAAGA
1 ATAATACAAGTAAGA
45094 ATAATA
1 ATAATA
45100 ATCAACTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (15 bp):
ATAATACAAGTAAGA
Found at i:46971 original size:21 final size:20
Alignment explanation
Indices: 46932--46971 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
46922 AGAATTAAGC
46932 TAAATAAACAAATAAAAATT
1 TAAATAAACAAATAAAAATT
* *
46952 TAAATGAAGAAATGAAAAAT
1 TAAATAAACAAAT-AAAAAT
46972 ATATATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (20 bp):
TAAATAAACAAATAAAAATT
Found at i:49214 original size:29 final size:29
Alignment explanation
Indices: 49172--49236 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
49162 CCAATTTGCT
*
49172 GGATCAATCGTGTAACAATACATTATGAA
1 GGATCAATCGTGTAACAACACATTATGAA
*
49201 GGATCAATCGTGTAACAACACGTTATGAA
1 GGATCAATCGTGTAACAACACATTATGAA
49230 GGATCAA
1 GGATCAA
49237 ATTTCGGATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (29 bp):
GGATCAATCGTGTAACAACACATTATGAA
Found at i:54626 original size:651 final size:650
Alignment explanation
Indices: 52820--55482 Score: 3590
Period size: 651 Copynumber: 4.1 Consensus size: 650
52810 TTGGCCAAAT
* *
52820 TACTCATAAAAATATATAATTTAACGCCGAAAAGATTGAAAGGCTTTTAAATATCTG-TTTTCCT
1 TACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTAAATATC-GATTTTCCT
* *
52884 ATTTTTTCCAAATTAATTTCTAATTAAATCGAAACATGATTCAGATGGTCGTAAAAACAAATCCT
65 ATTTTTTCCAAATTAATTTCTAGTTAAATCGAAACATGATTCAGATGGCCGT-AAAA-AAATCCT
* *
52949 CAAATCCAATAT-GAGTGAGATTTGGTTAGATGAATATAGATATTTCACTGTGTCTTGGTGCCAA
128 TAAATCCAATATAG-GTGAGATTTGGTTAGATGAATATAGATATTTCACTGAGTCTTGGTGCCAA
* * *
53013 AAATCATGCAAAACTGAGTCGGGGCCGCGTAACGCGTTTTTAGCCAAAAACCGTGCTAGTTAGTA
192 AAAACATGCAAAACTGAGTCGGGGCC-CGT-A--CGTTTTTAGCCAAAAACCGTGATAATTAGTA
* *
53078 TACGATTTCGGCTAAATTTTTGCAAAAAATGAAATGAAA-TTTTATCCCTCAATTTTTAGCCACT
253 TACGATTTCGGCTAAATTTTTGCAAAAAATGAACTGAAAGTTTT-TCCCTCAATTCTTAGCCACT
*
53142 ATACTCATAAAATATATATAATTCAACGCCAAAATGACTGAATGGTTTTTCACGCTTCCAATATC
317 ATACTCATAAAATATATATAATTCAACGCCAAAATGATTGAATGGTTTTTCACGCTTCCAATATC
*
53207 GTTTTCCCTATTTTTTCCGAATCAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAA
382 GTTTTCCCTATTTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAA
* ** * * *
53272 ATATATCCTTAAATTTAACGTGGAGTAGGTTTGGTTAGATAAATATAGATATTTCAAGGAGCTTT
447 ATAAATCCTTAAATCCAACGTGGAGTAGATTTGGTAAGATGAATATAGATATTTCAAGGAGCTTT
** * * *
53337 TTGTTCAAAAAATCATGCAAAACAGCGCCTGGGCCCCAAAACGTGTTTTTAGCTAAAAACCGTGA
512 TTGCGCCAAAAATCATGCAAAACAGAGCCAGGGCCCCAAAACGTGTTTTTAGCTAAAAACCGTGA
* * * *
53402 TGTAACGTACATGATTTCGGCAAAAAATTTGCAAAAATTTACCCGAAAGAATATTTCTCAAATTT
577 TGTAACGTACACGATTTCGACTAAAAATTTGCAAAAATTTACCCGAAAGAATATTTCTCAATTTT
53467 TGGCCACGA
642 TGGCCACGA
*
53476 TACTCAT-AAAATCATATAATTCAACGCCAAAAAGATTAAAAGGCTTTTAATGTATCTAATATCG
1 TACTCATAAAAAT-ATATAATTCAACGCCAAAAAGATTGAAAGGC--TT--T-TA---AATATCG
*
53540 ATTTTCCTATTTTTTCCAAATTAATTTCTAGTTGAATCG-AACATGA-TCAGATGGCCGTAAAAA
57 ATTTTCCTATTTTTTCCAAATTAATTTCTAGTTAAATCGAAACATGATTCAGATGGCCGTAAAAA
* *
53603 AATCCTTAAATCCAAAATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACCGAGTCTTGGT
122 AATCCTTAAATCCAATATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACTGAGTCTTGGT
* * * *
53668 GCAAAAAAATCATGCAAAACAGAGTCGGGGGCCCGTAACGCGTTTTTAGCTAAAAATCGTGATAA
187 GCCAAAAAA-CATGCAAAACTGAGTC-GGGGCCCGT-A--CGTTTTTAGCCAAAAACCGTGATAA
*
53733 TTAGTATACGATTTCGGTTAAA-TTTTGCAAAAAATGAACTG-AAGTTTTTCCCTCAGATTCTTA
247 TTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACTGAAAGTTTTTCCCTCA-ATTCTTA
* * *
53796 GCCACTTTACTCATAAAATATATATAATTCATCGCAAAAATGATTGAATGGTTTTTCACGCTTCC
311 GCCACTATACTCATAAAATATATATAATTCAACGCCAAAATGATTGAATGGTTTTTCACGCTTCC
* *
53861 AATATCGTTTTCCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGGTGCT-
376 AATATCGTTTTCCCTATTTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTC
*
53925 -TAAAAAATAAATCCTTAAATCCAACGTGGA-TGAGATTTGGTTAA-ATGAATATAGATATTTCT
441 GT-AAAAATAAATCCTTAAATCCAACGTGGAGT-AGATTTGG-TAAGATGAATATAGATATTTCA
* * *
53987 AGGAG-TTTTTGCGCCAAAAATCATGCAAAACAGAGCCAGGGTCCCGAAACGCGTTTTTAGCTAA
503 AGGAGCTTTTTGCGCCAAAAATCATGCAAAACAGAGCCAGGGCCCCAAAACGTGTTTTTAGCTAA
* * * * * *
54051 ACACTGTGATGATTA-GCACACGCTTTCGACTAAAAATTTGCAAAAATATACCCGAAAGAATATT
568 AAACCGTGATG-TAACGTACACGATTTCGACTAAAAATTTGCAAAAATTTACCCGAAAGAATATT
54115 TCTCAATTTTTGGCCACGA
632 TCTCAATTTTTGGCCACGA
* *
54134 TACTCATAAGAAATATATAATTCAATGCCAAAAAGATTGAAAGGCTTTTAAATATCGGTTTTCCT
1 TACTCATAA-AAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTAAATATCGATTTTCCT
* *
54199 ATTTTTTCCAAATTAATTTCTAGTTAGATCGAAACATGATTCAGTTGGCCGTAAAAAAATCCTTA
65 ATTTTTTCCAAATTAATTTCTAGTTAAATCGAAACATGATTCAGATGGCCGTAAAAAAATCCTTA
*
54264 AATCCAATATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACTGTGTCTTGGTGCCAAAAA
130 AATCCAATATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACTGAGTCTTGGTGCCAAAAA
* * * * *
54329 ACGTGCAAAACTGAATCGGGGCCACGT-CGTTTTTAGCAAAAAACCGCGATAGTTAGTATACGAT
195 ACATGCAAAACTGAGTCGGGGCC-CGTACGTTTTTAGCCAAAAACCGTGATAATTAGTATACGAT
* * *
54393 TTCGGCCT-AATTTTTTCAAAAACTGAACTGAAAGTTTTTCCCTCAATTTTTAGCCACTATACTC
259 TTCGG-CTAAATTTTTGCAAAAAATGAACTGAAAGTTTTTCCCTCAATTCTTAGCCACTATACTC
*
54457 TTAAAATATATATAATTCAACGCCAAAATGATTGAATGGTTTTTTCACGCTTCCAATATCGTTTT
323 ATAAAATATATATAATTCAACGCCAAAATGATTGAATGG-TTTTTCACGCTTCCAATATCGTTTT
** * * *
54522 CTATATTTTTTTCGAATTAATATGTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAA
387 CCCTATTTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAA
* * * * *
54587 TCCTCAAATCCAATGTGGTGTAGATTTGGTAAGATGAATATAGATATTTCAAGGAG-TCTCTGCG
452 TCCTTAAATCCAACGTGGAGTAGATTTGGTAAGATGAATATAGATATTTCAAGGAGCTTTTTGCG
* ** * * * *
54651 CCAAAAATCATTCAAAACAGAGCTTGGGCCCCGAATCATGTTTTTAGCTAAAAACCGTGATGGTT
517 CCAAAAATCATGCAAAACAGAGCCAGGGCCCCAAAACGTGTTTTTAGCTAAAAACCGTGAT-GTA
* *
54716 A-GTATACGATTTCGGA-TAAAATTTTGCAAAAATTTACCCGAAAGAATATTTCTCAATTTTTGG
581 ACGTACACGATTTC-GACTAAAAATTTGCAAAAATTTACCCGAAAGAATATTTCTCAATTTTTGG
*
54779 CCACTA
645 CCACGA
** *
54785 TACAAATAAAAAATATATAATTCAATGCCAAAAAGATTGAAAGGCTTTTAAATATCGATTTTCCT
1 TACTCAT-AAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTAAATATCGATTTTCCT
* * * * *
54850 ATTTTTTCCAAATTTATTTTTTCGTTAAATCGAAACATGATTGAGTTGGCCGTAAAAAAATCCTT
65 ATTTTTTCCAAA-TTAATTTCTAGTTAAATCGAAACATGATTCAGATGGCCGTAAAAAAATCCTT
* *
54915 AAATCCAATATAAGTGAGATTTGGTTAGATGAATATAGATATTTCAGTGAGTCTTGGTGCCAAAA
129 AAATCCAATATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACTGAGTCTTGGTGCCAAAA
* * *
54980 ATCATGCAAAACTGAGTCGGGGCCCCGTAACCCGTTTTTAGCCAAAAACCGTGATAAATAGTATT
194 AACATGCAAAACTGAGTCGGGG-CCCGT-A--CGTTTTTAGCCAAAAACCGTGATAATTAGTATA
* * *
55045 C-AGTTTCGGCTAAACTTTTGCAAAAAATGAACTGAAAGTTTTTTCCCTCAAATTCTTAACTACT
255 CGA-TTTCGGCTAAATTTTTGCAAAAAATGAACTGAAAG-TTTTTCCCTC-AATTCTTAGCCACT
*
55109 ATACTCATAAAATATATATAATTCAACGCCATAATGATTGAATGGTTTTTCACGCTTCCAATATC
317 ATACTCATAAAATATATATAATTCAACGCCAAAATGATTGAATGGTTTTTCACGCTTCCAATATC
* * *
55174 GTTTTCCCTATCTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATACTCATAAAA
382 GTTTTCCCTATTTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAA
* * * * * *
55239 ATAAATCCTTAAATTCAATGTGGAGTAGATTTGATTAGATGAATATAGATATTTCAAAGAGTTTT
447 ATAAATCCTTAAATCCAACGTGGAGTAGATTTGGTAAGATGAATATAGATATTTCAAGGAGCTTT
* * * *
55304 TTGAGTCAAAAATCATGCAAAACAGAG-CATGAGTCCCAAAACGTGTTTTTAGCTAAAAAACCGT
512 TTGCGCCAAAAATCATGCAAAACAGAGCCA-GGGCCCCAAAACGTGTTTTTAGCT-AAAAACCGT
* *
55368 GATGTAACGTACACGATTTCG-----------GCTAAAATTTACCCGATAGAATATTTCTCAATT
575 GATGTAACGTACACGATTTCGACTAAAAATTTGCAAAAATTTACCCGAAAGAATATTTCTCAATT
* *
55422 CTTGGCCACTA
640 TTTGGCCACGA
* * *
55433 TACTAATAAAAATATATAATTCAACGCCAAAAAGATTAAAAGACTTTTAA
1 TACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTAA
55483 TGCATCTAAT
Statistics
Matches: 1791, Mismatches: 167, Indels: 107
0.87 0.08 0.05
Matches are distributed among these distances:
647 40 0.02
648 87 0.05
649 71 0.04
650 88 0.05
651 295 0.16
652 161 0.09
653 88 0.05
654 2 0.00
655 9 0.01
656 93 0.05
657 144 0.08
658 234 0.13
659 117 0.07
660 224 0.13
661 71 0.04
662 17 0.01
663 8 0.00
664 42 0.02
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (650 bp):
TACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTAAATATCGATTTTCCTA
TTTTTTCCAAATTAATTTCTAGTTAAATCGAAACATGATTCAGATGGCCGTAAAAAAATCCTTAA
ATCCAATATAGGTGAGATTTGGTTAGATGAATATAGATATTTCACTGAGTCTTGGTGCCAAAAAA
CATGCAAAACTGAGTCGGGGCCCGTACGTTTTTAGCCAAAAACCGTGATAATTAGTATACGATTT
CGGCTAAATTTTTGCAAAAAATGAACTGAAAGTTTTTCCCTCAATTCTTAGCCACTATACTCATA
AAATATATATAATTCAACGCCAAAATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCT
ATTTTTTCCGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCT
TAAATCCAACGTGGAGTAGATTTGGTAAGATGAATATAGATATTTCAAGGAGCTTTTTGCGCCAA
AAATCATGCAAAACAGAGCCAGGGCCCCAAAACGTGTTTTTAGCTAAAAACCGTGATGTAACGTA
CACGATTTCGACTAAAAATTTGCAAAAATTTACCCGAAAGAATATTTCTCAATTTTTGGCCACGA
Found at i:57039 original size:332 final size:329
Alignment explanation
Indices: 55700--60735 Score: 4895
Period size: 332 Copynumber: 15.2 Consensus size: 329
55690 ATTTCTAGTT
** *
55700 AGATTCAGATGGC-CGTAAAACCAAATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGAAT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
** * * * * * *
55764 ATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGAG
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
* * * *
55829 TTTTTAGCAAAAAACCGTGATAGTTAATATACGATTTCGGCTAAATTTTTGCCAAAAA-TGAACT
129 TTTTTAGC-TAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTG-CAAAAATTGAACC
* * * *
55893 TAAAG-TTTTTCCCTCAATATTTAGCCACTATACTCATGAAATATATATAATTCAACGCCAAAAT
192 GAAAGATATTT-CCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* * **
55957 GATTGAATGGTTTTTCACGCTTCCAATATCGTCTTCCCTATTTTTTCCAAATTAATTTTTGCTTA
256 GATTGAATGGTTTTTCACGCTTCCAATATCGT-TTTCCTATTTTTTCCAAATTAATTTCTAATTA
56022 AATCGAAACA
320 AATCGAAACA
* * *
56032 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGGAAG-AGATTTGGTTTGAGGGAT
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG--GTAGATTTGGTTAGATGAAT
* * *
56096 ATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGAAACGTG
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
* * ** * * * *
56161 TTTTTAGCTAAAAACTGTGATGGTTAAAACACGATTTCGGCTAAGATTTTG-AAAAATTTACCCG
129 TTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACCG
* * * *
56225 AAAGAGTATTT-CACAATTTTTGGCCA-TGATACTCATAAAAAATATATAATTCAACGCCAAAAA
193 AAAGA-TATTTCCTCAATTTTTAGCCACT-ATACTCATAAAATATATATAATTCAACGCCAAAAT
* * *
56288 GATTGAAAGGCTTTT-A-------AATATCTGTTTTCCTATTTTTTCCAAATTAATTTCTCATTA
256 GATTGAATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAATTA
56345 AATCGAAACA
320 AATCGAAACA
* * * *
56355 TGATTCAGATGGC-CTTAAACAA-AAATCCTTAAATCCAATATGGGTGAGTTTTGGTTAAATGAA
1 AGATTCAGAT-GCTCGTAAA-AATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAA
*** * * * * *
56418 TATAGATATTTCACTTAGTCTTGGTGCCAAAAATCATGAAAAACTGTGTC-GGAGCTCCGTAACG
63 TATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGG-GCCCCGTAACG
* * * *
56482 CGTTTTTAGCAAAAAACCGTGATAGTTAGTATACGATTCCGGCT-AAATTTTCACAAAAATTGAA
127 TGTTTTTAGC-TAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTT-GCAAAAATTGAA
* * *
56546 CTGAAAG-TTTTTCCCTCAAATTTTTAGCCACTAGACTCATAAAATATATATAATTCAACGCCAA
190 CCGAAAGATATTT-CCTC-AATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAA
* *
56610 AATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCT-TTTTTTATCGAATTAATTTCTA
253 AATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTT-CCAAATTAATTTCTA
*
56674 AATAAATCGAAACA
316 ATTAAATCGAAACA
* ** *
56688 AAATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACGTGGAGTAGATTTGGTTAGATAAAAT
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG-GTAGATTTGGTTAGAT-GAAT
* * * ** **
56753 ATAGATATTTCAAGGACTCTCT-GCGCCAAAATTCATGCAAAACAGAGCCTAAGCCCCAAAACGT
64 ATAGATATTTCAAGGAGTCT-TGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGT
* * * *
56817 GTTTTTAGCTAAAACTGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTTACCCG
128 GTTTTTAGCTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACCG
* * * * * * * *
56882 AAAGAATATTT-CTCAATTTTTGGTCACGACACTTATAAAAAATATATAACTCAACGCCAAAAAG
193 AAAG-ATATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATG
* * ** * *
56946 ATTGAAAGGCTTTGAACGCATCTAATATCAGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAA
257 ATTGAATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAATTAA
57011 ATCGAAACA
321 ATCGAAACA
* * *
57020 TGATTCAGATGGC-CGTAAAAACAAATCCTTGAATCCAATATGGGTAAGATTTGGTTAGATGAAT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
* ** * * * *** ** *
57084 ATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTGAGTAGGGGCTACGTAACGCG
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
* * * *
57149 GTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGC-AAAATTTTTGCAAAAAATGAACT
129 TTTTTAG-CTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAA-TTTTGCAAAAATTGAACC
* * *
57213 GAAAG-TTTTTCCCTCAATTTTATAGCCACTATACTCATAATATATATATAATTCAAAGCCAAAA
192 GAAAGATATTT-CCTCAATTTT-TAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAA
**
57277 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTCCTT
255 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTCTAATT
57342 AAATCGAAACA
319 AAATCGAAACA
*
57353 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAG-AGATTTGGTTAGATGAAT
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG--GTAGATTTGGTTAGATGAAT
* * * *
57417 ATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAACAGAGCCTGAGCCCCG-ATACGT
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTA-ACGT
* * * * * * *
57481 GTTTTTAGCTAAAAACTGTGATGGTTAGTACACGGTTTCGGCTAAGATTTTGCAAAAATTTACCC
128 GTTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACC
* * * * * * *
57546 GAAACAGTATTT-CTGAATTTTTGGTCACGATACTCATAAAAAATATATAATTCAACGCCAAAAA
192 GAAAGA-TATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* * * * * * * *
57610 GATTGAGA-GGCTTCTAACACATCTAATATCGGTTTTCTTATTTTTTCCTAATTAATTTCTAATT
256 GATTGA-ATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAATT
57674 AAATCGAAACA
319 AAATCGAAACA
* * * *
57685 TGATTCAGATGGC-CGTAAAAACAAATCCTTGAATCCAGTATGGGTGAGATTTGGTTAGATGAAT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
* ** * * *** * * *
57749 ATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTA-AGTAGGGGGCTCGTAACGC
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAAC-AGAGCCTGGGCCCCGTAACGT
* *
57813 GTTTTTAGTCAAAAACCGTGATAGTTAGTATACGATTTCGGC-AAAATTTTTGCAAAAAATGAAC
128 GTTTTTAG-CTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAA-TTTTGCAAAAATTGAAC
* *** *
57877 TGAATTTTTTTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
191 CGAAAGATATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* * * *
57942 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTTCGAATTAATATCTAAATA
256 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTCTAATTA
58007 AATCGAAACA
320 AATCGAAACA
** * *
58017 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAAGGTGGTGTATA-TTGGTTAGTTGAAT-
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG-GTAGATTTGGTTAGATGAATA
* * *
58080 TAAAATATTTCAGGGAGTCTCT-GCGCCAAAAATCATGCAAAACAGAGCCTGGGCCCC-TAAACG
65 T-AGATATTTCAAGGAGTCT-TGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGT-AACG
* * * * *
58143 TGTTTTTAGCTAAAAACCGTGATAGATAGCACACGATTTCAGCTAAAATTTTGCAAAAAATT-AC
127 TGTTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGC-AAAAATTGAA
* * * * * *
58207 CCGAAAGAATATTT-CTCAATTTTTGGCCA-TGATAATCATAAAAAATATTTAATTAAATGCCAA
190 CCGAAAG-ATATTTCCTCAATTTTTAGCCACT-ATACTCATAAAATATATATAATTCAACGCCAA
* * *
58270 AAAGATTGAATGGCTTTT-A-------AATATCAGTTTTCCTATTTTTTCCAAATTAATTTCTAG
253 AATGATTGAATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAA
58327 TTAAATCGAAACA
317 TTAAATCGAAACA
* * * *
58340 TGATTCAGATGGC-CGTAAAAACAAATCCTTAAACCCAATAAT-GGTGAGATTTGTTTAGATGAA
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAAT-ATGGGT-AGATTTGGTTAGATGAA
** * * * * * * *
58403 TATAGATATTTCACTGTGCCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGC
63 TATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGT
* * * *
58468 GTTTTT-GCCAAAAACCCGTGATAGTTAATATACGATTTCGGCTAAATTTTTGCAAAAAATGAAC
128 GTTTTTAG-CTAAAA-CCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAAC
* * *
58532 TGAAAG-TTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACTCCAAAA
191 CGAAAGATATTT-CCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAA
* **
58596 TGATTGAATGGTTTTTCACGCTTCCAATATAGTTTTCCCTATTTTTTCCAAATTAATTTCTGCTT
255 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTCTAATT
*
58661 AAATTGAAACA
319 AAATCGAAACA
* * * *
58672 AGATTCAGATGCTCGTAAAAATAAATCCTTTAATCCAACATGGAAG-CGATTTGGTTTGATGAAT
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG--GTAGATTTGGTTAGATGAAT
* * * * *
58736 ATAGATATTTCAAGGAGTCTT-TTCGCAAAAAATCATTCAAAACAGAGCCTGTGCCCCGAAACGT
64 ATAGATATTTCAAGGAGTCTTGGT-GCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGT
* * * * * * * * *
58800 GTTTTTAGCTAAAAACTGTGATGGTTAGTACACGATTTCGACTAAGATCTTACAAAAATTTACCC
128 GTTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACC
* * *
58865 GAAAGAGAATTT-CTCAATTTTTGGCCA-TGATACTCATAAAAAATATATAATTCAACGCCAAAA
192 GAAAGA-TATTTCCTCAATTTTTAGCCACT-ATACTCATAAAATATATATAATTCAACGCCAAAA
* * *
58928 AGATTGAAAGGCTTTT-A-------AATATCTGTTTTCCTATTTTTTCCAAATTAATTTCTCAA-
255 TGATTGAATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCT-AAT
58984 TAAATCGAAACA
318 TAAATCGAAACA
* ** * * * *
58996 TGATTCAGATGGC-CGTAAAACCAAATCCTTCAATACAATATGGGTGAGTTTTGGTTAAATGAAT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
* ** * * * * * * **
59060 ATAGAAATTTCACTGAGTTTTGGTGCCAAAAATCATGAAAAACTGTGTC-GGAGCTCCGTAACAA
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGG-GCCCCGTAACGT
* * * * * * * *
59124 GTTTTAAACAAAAAACCGTGATAGTTAGTATACGATTTCAGCCAAATTTTTACAAAAATTGAACT
128 GTTTTTAGC-TAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACC
* * *
59189 GAAAG-T-TTTCCCTCAAATTTTTAGCCACTAGACTCAGAAAATATATATAATTCAATGCCAAAA
192 GAAAGATATTT-CCTC-AATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAA
* * * *
59252 TGATTGAATGGTTTTTCACGCTTCTAATATCGTTTTCCCTATTTTTTTCGAATTAATTTCTAAAT
255 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTCTAATT
59317 AAATCGAAACA
319 AAATCGAAACA
* * * ** *
59328 AAATTCAGATGCTCGTAAAAATAAATCTTTAAATCAAACGTGGAGTAGATTTGGTTAGATAAATA
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG-GTAGATTTGGTTAGATGAATA
* ** **
59393 TAGATATTTCAAGGAGTCTCT-GCGCCAAAAATCATGCAAAACAGAGCCTAAGCCCCAAAACGTG
65 TAGATATTTCAAGGAGTCT-TGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
** * * * *
59457 TTTTTAGCTAAAAATTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTTACCCG
129 TTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACCG
* * * * * * *
59522 AAAGAATATTT-CTCAATTTTTGGTCACGATACTAATAAAAAATATATAACTCAACGCCAAAAAG
193 AAAG-ATATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATG
* * * * *
59586 ATTGAAAGGCTTTTAACGCATCTAATATCGGTTTTCCTA-TTTTTCCAAATTAATTTCTAATTAA
257 ATTGAATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAATTAA
*
59650 ACCGAAACA
321 ATCGAAACA
* * * ** *
59659 TGATTAAGATGGC-CATAAAACCAAATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGAAT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
** * * * * * *
59723 ATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGCG
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
* * * **
59788 TTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAATTG
129 TTTTTAG-CTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACCG
* **
59853 AAAG-TTTTTCCCCTC-ATTTTATAGCCACTATACTCATATATATATATATATATATAT-AA-TA
193 AAAGATATTT--CCTCAATTTT-TAGCCACTATACTCATA-A-A-ATATATATA-AT-TCAACGC
*
59914 CAAAATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTCATTTC
250 CAAAATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTC
**
59979 TCCTTAAATCGAAACA
314 TAATTAAATCGAAACA
* * * *
59995 AGATACAGATACTCGTAAAAATAAATCCTTAAATCCAACATGGAAG-AGATTTGGTTAGAGGAAT
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG--GTAGATTTGGTTAGATGAAT
** * *
60059 ATAGATATTTCAAGGAGTCTCT-GCACCAGAAATCATGCAAAACAGAGCCTGAGCCCCG-ATACG
64 ATAGATATTTCAAGGAGTCT-TGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTA-ACG
* * * * * * *
60122 TGTTTTTAGCTAAAAACTGTGA-A---CGTACACGGTTTCGGCTAAGATTTTGCAAAAATTTACC
127 TGTTTTTAGCT-AAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAAC
* * * * *
60183 CGAAACAGTATTT-CTCAATTTCTGGTCA-TGATACTCATAAAAAATATATAATTCAACGCCAAA
191 CGAAAGA-TATTTCCTCAATTTTTAGCCACT-ATACTCATAAAATATATATAATTCAACGCCAAA
* * * * * * *
60246 AAGATTGAGA-GGCTTCTAACGCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTTA
254 ATGATTGA-ATGGTTTTTCACGCTTCCAATATC-GTTTTCCTATTTTTTCCAAATTAATTTCTAA
60310 TTAAATCGAAACA
317 TTAAATCGAAACA
* ** * * *
60323 TGATTCAGATGGC-CGTAAAACCAGATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGATT
1 AGATTCAGAT-GCTCGTAAAAATAAATCCTTAAATCCAATATGGGT-AGATTTGGTTAGATGAAT
* ** * * * *** * * *
60387 ATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTGAGTAGGGGGCTCGTAACGCG
64 ATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTG
* * * *
60452 TTTTTAGTCAAAAATCGTTATAGTTAGTATACGATTTCGGC-AAAATTTTTGCAAAAAATGAACC
129 TTTTTAG-CTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAA-TTTTGCAAAAATTGAACC
** * * * * *
60516 GAAATTTTTTTCCTCAATTTTTAGCCACTATACCCATAAAATGTATATAATTCGACGCCAGAATG
192 GAAAGATATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATG
* * * *
60581 ATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTTCGAATTAATATCTAAATAA
257 ATTGAATGGTTTTTCACGCTTCCAATATCGTTTT-CCTATTTTTTCCAAATTAATTTCTAATTAA
60646 ATCGAAACA
321 ATCGAAACA
* * *** * *
60655 AAATTCATATGCTCGTAAAAATAAATCCTTAAATCCAGGGTGGTTTAGATTTGGTTAGTTGAATA
1 AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGG-GTAGATTTGGTTAGATGAATA
60720 TAGATATTTCAAGGAG
65 TAGATATTTCAAGGAG
60736 CCTGGGCCCC
Statistics
Matches: 3791, Mismatches: 721, Indels: 384
0.77 0.15 0.08
Matches are distributed among these distances:
321 4 0.00
322 19 0.01
323 267 0.07
324 431 0.11
325 70 0.02
326 4 0.00
327 5 0.00
328 180 0.05
329 15 0.00
330 24 0.01
331 538 0.14
332 1512 0.40
333 428 0.11
334 85 0.02
335 59 0.02
336 147 0.04
337 2 0.00
338 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (329 bp):
AGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGGGTAGATTTGGTTAGATGAATAT
AGATATTTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCGTAACGTGTT
TTTAGCTAAAACCGTGATAGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGAACCGAAA
GATATTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATGATTG
AATGGTTTTTCACGCTTCCAATATCGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGA
AACA
Found at i:57178 original size:665 final size:662
Alignment explanation
Indices: 55523--60735 Score: 7384
Period size: 656 Copynumber: 7.9 Consensus size: 662
55513 CAAAATGAAT
* * * *
55523 GCTAAAAACCGTGATGGTTTGTACACAATTTCGGCTGAA-ATTTTGCGAAAATTTACCCGAAAGA
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCT-AAGATTTTGCAAAAATTTACCCGAAAGA
* * * * * * *
55587 ATACTTCTGAATTTTGGGCCAAGATACTCATAAAAAATATATAATTCAATGCCGAAAAGATTGAA
65 ATATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAA
* * * * *
55652 AGGCTTT-----TC-AATATCGATTTTTCTA-TTTTTCTAGATTAATTTCT-AGT---T------
130 AGGCTTTAACCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAAC
* *
55700 A-GATTCAGATGGCCGTAAAACCAAATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGAAT
195 ATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAAT
* *
55764 ATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGAG
260 ATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGCG
* * * *
55829 TTTTTAGCAAAAAACCGTGATAGTTAATATACGATTTCGGCTAAATTTTTGCCAAAAATGAACTT
325 TTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACTG
* *
55894 AAAGTTTTTCCCTCAATATTTAGCCACTATACTCATGAAATATATATAATTCAACGCCAAAATGA
390 AAAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATGA
* * ***
55959 TTGAATGGTTTTTCACGCTTCCAATATCGTCTTCCCTATTTTTTCCAAATTAATTTTTGCTTAAA
455 TTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATAAA
* *
56024 TCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGGAAGAGATTTGGTTT
520 TCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGGTTA
* * * *
56089 GAGGGATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACAGAGCCTGGGCCCCG
585 GATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGCCCCG
56154 AAACGTGTTTTTA
650 AAACGTGTTTTTA
** *
56167 GCTAAAAACTGTGATGGTTAAAACACGATTTCGGCTAAGATTTTG-AAAAATTTACCCGAAAGAG
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
* *
56231 TATTTCACAATTTTTGGCCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
66 TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
* * *
56296 GGCTTT-----T-AAATATCTGTTTTCCTATTTTTTCCAAATTAATTTCTCATTAAATCGAAACA
131 GGCTTTAACCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACA
* * *
56355 TGATTCAGATGGCCTTAAACAA-AAATCCTTAAATCCAATATGGGTGAGTTTTGGTTAAATGAAT
196 TGATTCAGATGGCCGTAAA-AACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAAT
* * * *
56419 ATAGATATTTCACT-TAGTCTTGGTGCCAAAAATCATGAAAAACTGTGTCGGAGCTCCGTAACGC
260 ATAGATATTTCACTGT-GTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGC
* * ** *
56483 GTTTTTAGCAAAAAACCGTGATAGTTAGTATACGATTCCGGCTAAATTTTCACAAAAATTGAACT
324 GTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
*
56548 GAAAGTTTTTCCCTCAAATTTTTAGCCACTAGACTCATAAAATATATATAATTCAACGCCAAAAT
389 GAAAGTTTTTCCCTC-AATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* *
56613 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCT-TTTTTTATCGAATTAATTTCTAAAT
453 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTT-CCAAATTAATTTCTAAAT
* *
56677 AAATCGAAACAAAATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACGTGG-AGTAGATTTG
517 AAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAG-AGATTTG
* * * *
56741 GTTAGATAAAATATAGATATTTCAAGGACTCTCTGCGCCAAAATTCATGCAAAACAGAGCCTAAG
581 GTTAGAT-GAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAG
*
56806 CCCCAAAACGTGTTTTTA
645 CCCCGAAACGTGTTTTTA
* *
56824 GCT-AAAACTGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTTACCCGAAAGAA
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
* * * *
56888 TATTTCTCAATTTTTGGTCACGACACTTATAAAAAATATATAACTCAACGCCAAAAAGATTGAAA
66 TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
*
56953 GGCTTTGAACGCATCTAATATCAGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
131 GGCTTT-AAC-CATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
* *
57018 CATGATTCAGATGGCCGTAAAAACAAATCCTTGAATCCAATATGGGTAAGATTTGGTTAGATGAA
194 CATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAA
* * *
57083 TATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTGAGTAGGGGCTACGTAACGC
259 TATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGC
* *
57148 GGTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCAAAATTTTTGCAAAAAATGAACT
324 GTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
* *
57213 GAAAGTTTTTCCCTCAATTTTATAGCCACTATACTCATAATATATATATAATTCAAAGCCAAAAT
389 GAAAGTTTTTCCCTCAATTTT-TAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
***
57278 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTCCTTA
453 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATA
57343 AATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGGT
518 AATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGGT
* *
57408 TAGATGAATATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAACAGAGCCTGAGCCC
583 TAGATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGCCC
*
57473 CGATACGTGTTTTTA
648 CGAAACGTGTTTTTA
* * *
57488 GCTAAAAACTGTGATGGTTAGTACACGGTTTCGGCTAAGATTTTGCAAAAATTTACCCGAAACAG
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
* * *
57553 TATTTCTGAATTTTTGGTCACGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAGA
66 TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
* *
57618 GGCTTCTAACACATCTAATATCGGTTTTCTTATTTTTTCCTAATTAATTTCTAATTAAATCGAAA
131 GGCTT-TAAC-CATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
* *
57683 CATGATTCAGATGGCCGTAAAAACAAATCCTTGAATCCAGTATGGGTGAGATTTGGTTAGATGAA
194 CATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAA
* * * *
57748 TATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTAAGTAGGGGGCT-CGTAACG
259 TATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGT-CGGGGCTACGTAACG
* *
57812 CGTTTTTAGTCAAAAACCGTGATAGTTAGTATACGATTTCGGCAAAATTTTTGCAAAAAATGAAC
323 CGTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAAC
** *
57877 TGAATTTTTTTTCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
388 TGAAAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* * *
57942 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTTCGAATTAATATCTAAATA
453 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATA
** * *
58007 AATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAAGGTGG-TG-TATATTGG
518 AATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGAT-TTGG
* * * *
58070 TTAGTTGAAT-TAAAATATTTCAGGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGGGC
582 TTAGATGAATAT-AGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGC
*
58134 CCCTAAACGTGTTTTTA
646 CCCGAAACGTGTTTTTA
* * * * * * *
58151 GCTAAAAACCGTGATAGATAGCACACGATTTCAGCTAAAATTTTGCAAAAAATTACCCGAAAGAA
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
* * * * * *
58216 TATTTCTCAATTTTTGGCCATGATAATCATAAAAAATATTTAATTAAATGCCAAAAAGATTGAAT
66 TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
* * *
58281 GGCTTT-----T-AAATATCAGTTTTCCTATTTTTTCCAAATTAATTTCTAGTTAAATCGAAACA
131 GGCTTTAACCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACA
* *
58340 TGATTCAGATGGCCGTAAAAACAAATCCTTAAACCCAATAAT-GGTGAGATTTGTTTAGATGAAT
196 TGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAAT-ATGGGTGAGATTTGGTTAGATGAAT
* *
58404 ATAGATATTTCACTGTGCCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGCG
260 ATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGCG
*
58469 TTTTT-GCCAAAAACCCGTGATAGTTAATATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
325 TTTTTAGCCAAAAA-CCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
*
58533 GAAAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACTCCAAAATG
389 GAAAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATG
* ***
58598 ATTGAATGGTTTTTCACGCTTCCAATATAGTTTTCCCTATTTTTTCCAAATTAATTTCTGCTTAA
454 ATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATAA
* * *
58663 ATTGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTTAATCCAACATGGAAGCGATTTGGTT
519 ATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGGTT
* * * * * *
58728 TGATGAATATAGATATTTCAAGGAGTCTTTTCGCAAAAAATCATTCAAAACAGAGCCTGTGCCCC
584 AGATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGCCCC
58793 GAAACGTGTTTTTA
649 GAAACGTGTTTTTA
* * *
58807 GCTAAAAACTGTGATGGTTAGTACACGATTTCGACTAAGATCTTACAAAAATTTACCCGAAAGAG
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGA-
*
58872 A-ATTTCTCAATTTTTGGCCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAA
65 ATATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAA
* *
58936 AGGCTTT-----T-AAATATCTGTTTTCCTATTTTTTCCAAATTAATTTCTCAA-TAAATCGAAA
130 AGGCTTTAACCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCT-AATTAAATCGAAA
* * * * *
58994 CATGATTCAGATGGCCGTAAAACCAAATCCTTCAATACAATATGGGTGAGTTTTGGTTAAATGAA
194 CATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAA
* * * * * * * **
59059 TATAGAAATTTCACTGAGTTTTGGTGCCAAAAATCATGAAAAACTGTGTCGGAGCTCCGTAACAA
259 TATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGC
* * * * * * *
59124 GTTTTAAACAAAAAACCGTGATAGTTAGTATACGATTTCAGCCAAATTTTTACAAAAATTGAACT
324 GTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
* * *
59189 GAAAG-TTTTCCCTCAAATTTTTAGCCACTAGACTCAGAAAATATATATAATTCAATGCCAAAAT
389 GAAAGTTTTTCCCTC-AATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAAT
* * *
59253 GATTGAATGGTTTTTCACGCTTCTAATATCGTTTTCCCTATTTTTTTCGAATTAATTTCTAAATA
453 GATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATA
* * * *
59318 AATCGAAACAAAATTCAGATGCTCGTAAAAATAAATCTTTAAATCAAACGTGG-AGTAGATTTGG
518 AATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAG-AGATTTGG
* *
59382 TTAGATAAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTAAGCC
582 TTAGATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGCC
*
59447 CCAAAACGTGTTTTTA
647 CCGAAACGTGTTTTTA
* *
59463 GCTAAAAATTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTTACCCGAAAGAA
1 GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
* * *
59528 TATTTCTCAATTTTTGGTCACGATACTAATAAAAAATATATAACTCAACGCCAAAAAGATTGAAA
66 TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
*
59593 GGCTTTTAACGCATCTAATATCGGTTTTCCTA-TTTTTCCAAATTAATTTCTAATTAAACCGAAA
131 GGC-TTTAAC-CATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
* * * *
59657 CATGATTAAGATGGCCATAAAACCAAATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGAA
194 CATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAA
*
59722 TATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCCACGTAACGC
259 TATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGC
*
59787 GTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAATT
324 GTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACT
**
59852 GAAAGTTTTTCCCCTC-ATTTTATAGCCACTATACTCATATATATATATATATATATAT-AA-TA
389 GAAAGTTTTT-CCCTCAATTTT-TAGCCACTATACTCATA-A-A-ATATATATA-AT-TCAACGC
*
59914 CAAAATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTCATTTC
447 CAAAATGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTC
*** * *
59979 TCCTTAAATCGAAACAAGATACAGATACTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGA
512 TAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGA
* * *
60044 TTTGGTTAGAGGAATATAGATATTTCAAGGAGTCTCTGCACCAGAAATCATGCAAAACAGAGCCT
577 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCT
*
60109 GAGCCCCGATACGTGTTTTTA
642 GAGCCCCGAAACGTGTTTTTA
* *
60130 GCTAAAAACTGTGA-----ACGTACACGGTTTCGGCTAAGATTTTGCAAAAATTTACCCGAAACA
1 GCTAAAAACTGTGATGGTTA-GTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGA
* * *
60190 GTATTTCTCAATTTCTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAG
65 ATATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAA
*
60255 AGGCTTCTAACGCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTTATTAAATCGAA
130 AGGCTT-TAAC-CATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAA
* * *
60320 ACATGATTCAGATGGCCGTAAAACCAGATCCTTAAATCCAATAAGGGTGAGATTTGGTTAGATGA
193 ACATGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGA
* * * *
60385 TTATTGATATTTCACTGTGTCTTGGTGCCAAAAATAATGCAAAACTGAGTAGGGGGCT-CGTAAC
258 ATATAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGT-CGGGGCTACGTAAC
* * * *
60449 GCGTTTTTAGTCAAAAATCGTTATAGTTAGTATACGATTTCGGCAAAATTTTTGCAAAAAATGAA
322 GCGTTTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAA
* * * * * * *
60514 CCGAAATTTTTTTCCTCAATTTTTAGCCACTATACCCATAAAATGTATATAATTCGACGCCAGAA
387 CTGAAAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAA
* * *
60579 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTTCGAATTAATATCTAAAT
452 TGATTGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAAT
* * *** ***
60644 AAATCGAAACAAAATTCATATGCTCGTAAAAATAAATCCTTAAATCCAGGGTGGTTTAGATTTGG
517 AAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGG
*
60709 TTAGTTGAATATAGATATTTCAAGGAG
582 TTAGATGAATATAGATATTTCAAGGAG
60736 CCTGGGCCCC
Statistics
Matches: 4089, Mismatches: 403, Indels: 138
0.88 0.09 0.03
Matches are distributed among these distances:
643 97 0.02
644 54 0.01
645 2 0.00
648 1 0.00
654 14 0.00
655 584 0.14
656 955 0.23
657 167 0.04
658 1 0.00
659 3 0.00
660 150 0.04
661 1 0.00
662 10 0.00
663 551 0.13
664 483 0.12
665 777 0.19
666 17 0.00
667 215 0.05
668 6 0.00
669 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (662 bp):
GCTAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAGATTTTGCAAAAATTTACCCGAAAGAA
TATTTCTCAATTTTTGGTCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAA
GGCTTTAACCATCTAATATCGGTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACA
TGATTCAGATGGCCGTAAAAACAAATCCTTAAATCCAATATGGGTGAGATTTGGTTAGATGAATA
TAGATATTTCACTGTGTCTTGGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTACGTAACGCGT
TTTTAGCCAAAAACCGTGATAGTTAGTATACGATTTCGGCTAAATTTTTGCAAAAAATGAACTGA
AAGTTTTTCCCTCAATTTTTAGCCACTATACTCATAAAATATATATAATTCAACGCCAAAATGAT
TGAATGGTTTTTCACGCTTCCAATATCGTTTTCCCTATTTTTTCCAAATTAATTTCTAAATAAAT
CGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAACATGGAAGAGATTTGGTTAG
ATGAATATAGATATTTCAAGGAGTCTCTGCGCCAAAAATCATGCAAAACAGAGCCTGAGCCCCGA
AACGTGTTTTTA
Done.