Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019633.1 Corchorus olitorius cultivar O-4 contig19666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57455

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5062--5119
31
1.9
31
89
3
91
25
12
27
34
1.91
5289--5364
29
2.6
29
87
6
100
19
25
14
40
1.89
5555--5632
29
2.7
29
89
0
129
38
10
25
25
1.87
5540--5638
29
3.4
29
84
1
126
40
12
26
21
1.88
7780--7943
31
5.4
30
71
17
126
34
16
18
30
1.93
7784--7943
60
2.7
60
91
1
250
35
16
18
30
1.93
7989--8154
60
2.8
60
83
1
199
31
19
13
34
1.91
10491--10711
110
2.0
106
89
6
336
46
12
17
23
1.82
22591--22618
2
14.0
2
100
0
56
0
0
50
50
1.00
32096--32121
2
13.0
2
100
0
52
50
0
50
0
1.00
33598--33632
11
3.2
11
83
0
52
77
17
5
0
0.96
47723--47766
17
2.6
17
89
3
72
54
0
36
9
1.32
48845--48888
15
2.9
16
80
13
56
6
47
0
45
1.29
50660--50711
25
2.1
24
85
3
68
30
5
5
57
1.46
53376--53412
18
2.1
18
94
0
65
24
8
37
29
1.84

Tables:   1

The End!