Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019634.1 Corchorus olitorius cultivar O-4 contig19667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114283

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9854--9879
11
2.4
11
100
0
52
46
38
15
0
1.46
13547--15651
332
6.4
330
78
7
1846
35
14
15
34
1.88
15656--16484
323
2.6
321
81
5
897
34
13
16
35
1.88
17361--17389
3
9.7
3
100
0
58
65
0
0
34
0.93
17388--17414
3
9.0
3
100
0
54
33
0
0
66
0.92
18171--18587
207
2.1
203
88
3
617
30
18
16
34
1.93
23669--23746
35
2.1
39
86
13
110
44
8
10
35
1.70
31700--31731
16
2.0
16
100
0
64
75
6
6
12
1.19
31863--31929
21
3.0
21
68
19
64
68
11
5
13
1.37
31903--31958
29
1.9
29
96
0
103
67
10
1
19
1.29
31908--31958
16
3.4
16
84
15
81
66
11
0
21
1.23
31949--31987
18
2.2
18
100
0
78
74
15
5
5
1.17
33089--33333
121
2.0
122
92
1
411
42
16
12
28
1.84
37421--37495
37
2.0
37
87
5
107
42
5
20
32
1.74
39369--39410
17
2.4
18
88
7
61
21
9
7
61
1.50
52655--52711
28
2.1
28
93
3
98
50
3
8
36
1.50
55945--55995
24
2.1
25
85
3
68
66
3
11
17
1.38
60614--60926
106
2.9
106
89
2
477
37
16
20
25
1.93
65032--65069
20
1.9
20
84
10
51
73
2
0
23
0.95
71688--71728
19
2.2
19
100
0
82
60
4
9
24
1.47
92454--92487
17
2.0
17
100
0
68
35
23
17
23
1.95
100325--100359
11
3.2
11
83
0
52
77
17
5
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104871--104895
4
6.2
4
100
0
50
0
24
0
76
0.80
106204--106228
12
2.1
12
100
0
50
24
32
0
44
1.54
107951--108020
31
2.2
33
80
7
83
57
22
5
14
1.59
114240--114283
2
22.0
2
90
0
70
4
50
0
45
1.22

Tables:   1

The End!