Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019638.1 Corchorus olitorius cultivar O-4 contig19671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3812
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:979 original size:19 final size:19

Alignment explanation


    Indices: 955--991  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        945 CTGTTTAGCA

                               
        955 ACTGTACAAATGAGATTAC
          1 ACTGTACAAATGAGATTAC

                    *  *      
        974 ACTGTACAGATTAGATTA
          1 ACTGTACAAATGAGATTA

        992 GGTATTGTAC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30


Consensus pattern (19 bp):   
ACTGTACAAATGAGATTAC
Done.