Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019642.1 Corchorus olitorius cultivar O-4 contig19675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12363
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:9734 original size:12 final size:12

Alignment explanation


    Indices: 9719--9756  Score: 53
    Period size: 11  Copynumber: 3.3  Consensus size: 12

       9709 AGGTTTTTAA

                        
       9719 TTTGTGTTTTTT
          1 TTTGTGTTTTTT

                        
       9731 TTTGTG-TTTTT
          1 TTTGTGTTTTTT

             *          
       9742 TGTGT-TTTTTT
          1 TTTGTGTTTTTT

                
       9753 TTTG
          1 TTTG

       9757 GAAACTATAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  11   17  0.74
  12    6  0.26

ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82


Consensus pattern (12 bp):   
TTTGTGTTTTTT

Found at i:10097 original size:15 final size:15

Alignment explanation


    Indices: 10077--10106  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      10067 GCAATATTTC

                    *      
      10077 ATTTCATATTATGAA
          1 ATTTCATAATATGAA

                           
      10092 ATTTCATAATATGAA
          1 ATTTCATAATATGAA

      10107 CTTTAAAGTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43


Consensus pattern (15 bp):   
ATTTCATAATATGAA
Done.