Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019646.1 Corchorus olitorius cultivar O-4 contig19679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13091
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:3226 original size:5 final size:5

Alignment explanation


    Indices: 3216--3268  Score: 97
    Period size: 5  Copynumber: 10.6  Consensus size: 5

       3206 AACTATTTAC

                                                               *       
       3216 ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAAA ACAGA
          1 ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA

               
       3266 ACA
          1 ACA

       3269 TCAGCAATAC


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   5   46  1.00

ACGTcount: A:0.62, C:0.21, G:0.17, T:0.00


Consensus pattern (5 bp):   
ACAGA

Done.