Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019648.1 Corchorus olitorius cultivar O-4 contig19681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7472
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:1795 original size:23 final size:22

Alignment explanation


    Indices: 1753--1795  Score: 52
    Period size: 23  Copynumber: 1.9  Consensus size: 22

       1743 AAAAATATAC

                           *      
       1753 AAATATAATTTATTTCTCATAG
          1 AAATATAATTTATTTATCATAG

                                  
       1775 AAATAATAATATTA-TTATCAT
          1 AAAT-ATAAT-TTATTTATCAT

       1796 TTTGAATTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 3
        0.82            0.05        0.14

Matches are distributed among these distances:
  22    4  0.22
  23   11  0.61
  24    3  0.17

ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44


Consensus pattern (22 bp):   
AAATATAATTTATTTATCATAG
Done.