Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001965.1 Corchorus olitorius cultivar O-4 contig01965, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:673 original size:9 final size:8

Alignment explanation


    Indices: 643--673  Score: 53
    Period size: 8  Copynumber: 3.8  Consensus size: 8

        633 TTAATTTCTT

                    
        643 TAATTTCC
          1 TAATTTCC

                    
        651 TAATTTCC
          1 TAATTTCC

                    
        659 TAATTTCC
          1 TAATTTCC

                   
        667 ATAATTT
          1 -TAATTT

        674 TCATAAGTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   16  0.73
   9    6  0.27

ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52


Consensus pattern (8 bp):   
TAATTTCC
Done.