Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019654.1 Corchorus olitorius cultivar O-4 contig19687, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50564

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1964--2027
31
2.1
31
82
5
76
37
25
23
14
1.92
13438--13518
17
5.2
17
70
27
81
25
16
13
44
1.84
13433--13540
30
3.6
30
98
0
207
25
15
13
44
1.84
13433--13538
13
7.2
13
68
29
63
25
16
14
44
1.85
17899--17977
30
2.5
32
85
4
108
32
26
25
15
1.95
20155--20315
31
5.2
31
83
1
171
33
24
23
18
1.97
20488--20529
16
2.6
16
85
10
59
7
28
7
57
1.52
20488--20528
17
2.6
16
88
7
57
7
26
7
58
1.51
39808--39842
3
11.7
3
100
0
70
68
0
0
31
0.90
40829--40868
18
2.2
18
86
0
53
2
35
0
62
1.09
48706--48776
37
1.9
37
94
0
124
38
22
11
28
1.88

Tables:   1

The End!