Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001966.1 Corchorus olitorius cultivar O-4 contig01966, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:289 original size:47 final size:47

Alignment explanation


    Indices: 224--365  Score: 268
    Period size: 47  Copynumber: 3.0  Consensus size: 47

        214 GTTTATCAAA

                       *                                   
        224 TTCAAAAAATGACTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT
          1 TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT

                                                           
        271 TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT
          1 TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT

                                                           
        318 TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAA-AAAAAAT
          1 TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT

              
        364 TT
          1 TT

        366 AAGACTTAGA


Statistics
Matches: 94,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  46    9  0.10
  47   85  0.90

ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30


Consensus pattern (47 bp):   
TTCAAAAAATGTCTTTATCCGAAAAATGCTTATAGGAAATAAAAAAT
Done.