genome.fa.s19666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019666.1 Corchorus olitorius cultivar O-4 contig19699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88976

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4273	333	12.9	334	85	4	5209	33	15	14	35	1.89
4852--4885	7	4.9	7	100	0	68	0	14	0	85	0.60
6343--6841	32	15.0	32	90	7	782	34	25	8	31	1.86
6420--6483	21	3.1	21	68	4	67	32	29	6	31	1.82
6407--6468	20	3.0	20	67	4	61	32	29	9	29	1.89
6622--6685	21	3.1	21	68	4	67	32	29	6	31	1.82
6609--6670	20	3.0	20	67	4	61	32	29	9	29	1.89
6343--6841	202	2.5	201	98	0	962	34	25	8	31	1.86
6908--7132	122	1.8	122	92	1	380	43	21	22	12	1.87
14455--14507	27	2.0	27	88	7	81	35	13	16	33	1.88
14473--14544	37	1.9	37	85	0	99	31	19	19	29	1.96
14546--14688	32	4.6	32	78	10	154	44	10	16	28	1.81
14541--14688	59	2.4	59	85	5	188	43	10	16	29	1.81
20502--20579	29	2.7	29	85	2	102	17	24	14	43	1.86
20762--20826	31	2.2	31	89	10	100	43	13	18	24	1.87
23797--24021	113	2.0	112	81	6	258	20	20	19	39	1.93
25520--25548	13	2.2	13	100	0	58	6	62	0	31	1.22
32217--32388	91	1.9	91	91	0	281	41	11	8	38	1.71
32367--32456	44	2.0	44	93	0	153	40	15	7	36	1.76
34253--34329	40	1.9	41	97	2	147	24	29	2	42	1.68
36373--36757	190	2.0	189	91	2	630	32	16	12	37	1.87
37138--37176	19	2.0	20	85	5	53	43	2	7	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38842--38871	15	2.1	14	93	6	51	20	0	3	76	0.92
53618--53645	2	14.0	2	100	0	56	50	0	0	50	1.00
54534--54595	3	21.0	3	77	9	56	1	30	1	66	1.11
61250--61390	43	3.0	49	83	14	213	41	10	16	31	1.82
64915--64984	29	2.3	29	85	4	86	18	28	18	34	1.95
67988--68397	204	2.0	203	94	2	603	36	11	8	43	1.72
68911--68980	36	1.9	36	91	0	113	60	8	10	21	1.55
76866--76977	32	3.5	32	82	1	154	31	25	25	18	1.98
81339--81379	20	2.0	20	95	0	73	53	12	14	19	1.72
88904--88937	13	2.5	14	85	4	52	50	0	0	50	1.00
88905--88937	7	4.9	7	88	7	50	48	0	0	51	1.00

Tables:   1

The End!