Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019673.1 Corchorus olitorius cultivar O-4 contig19706, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81308

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2448--2496
23
2.1
23
100
0
98
36
24
8
30
1.85
4198--4294
2
48.5
2
97
0
185
50
48
0
1
1.07
15854--15896
2
21.5
2
100
0
86
48
0
0
51
1.00
33249--33338
36
2.5
36
100
0
180
18
23
10
47
1.79
38133--38208
30
2.5
30
84
0
98
30
15
17
36
1.91
46649--46820
85
2.0
86
97
1
328
23
12
17
46
1.82
58501--58532
3
10.7
3
100
0
64
34
34
31
0
1.58
58626--58652
13
2.1
13
100
0
54
74
7
0
18
1.05
59377--59414
4
10.0
4
91
5
53
0
18
0
81
0.69
60216--60295
29
2.7
29
84
3
97
37
22
22
17
1.94
64213--64252
20
2.0
20
100
0
80
40
15
20
25
1.90
66398--66452
16
3.1
18
77
17
62
34
9
3
52
1.50
75058--75096
2
19.5
2
100
0
78
0
51
0
48
1.00
77356--77523
82
2.0
83
89
1
257
36
23
13
26
1.92
78643--78707
31
2.2
29
86
5
85
33
13
24
27
1.93

Tables:   1

The End!