Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019674.1 Corchorus olitorius cultivar O-4 contig19707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40409

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3722--3756
17
2.1
17
100
0
70
17
17
5
60
1.55
4347--4387
18
2.3
18
91
0
64
9
29
9
51
1.67
4355--4395
6
6.8
6
85
0
55
4
29
14
51
1.63
4347--4395
18
2.7
18
87
0
62
8
28
12
51
1.68
6650--6745
34
2.8
34
100
0
192
18
2
19
59
1.48
6723--6941
108
2.0
108
92
0
366
20
7
23
48
1.75
7955--8003
24
2.0
25
92
4
82
20
32
28
18
1.96
11327--11354
2
14.0
2
100
0
56
50
0
0
50
1.00
12933--13025
44
2.1
45
86
6
127
54
17
16
11
1.70
12971--13070
52
1.9
52
87
0
146
55
15
18
12
1.70
21504--21548
24
1.9
23
81
4
54
4
2
28
64
1.25
25960--26001
15
2.9
15
86
10
61
33
16
2
47
1.60
30142--30167
13
2.0
13
100
0
52
38
7
0
53
1.30
32693--32723
16
1.9
16
100
0
62
32
0
35
32
1.58
36317--36468
79
1.9
79
98
0
295
36
11
13
38
1.80
36827--36867
20
2.0
20
95
0
73
29
0
21
48
1.50
39863--39939
3
25.7
3
100
0
154
33
0
0
66
0.92

Tables:   1

The End!